HPV6 L1

Accession: H002805
Protein: L1
Organism: Human papillomavirus type 6

Function

Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.

Mutation

5790-5800
5801-5900
5901-6000
6001-6100
6101-6200
6201-6300
6301-6400
6401-6500
6501-6600
6601-6700
6701-6800
6801-6900
6901-7000
7001-7100
7101-7200
7201-7292
Legend:same sensemissenseinsertiondeletion
show more details

Domain&Motif

method domain/motif name position length description graphical view
CDDPHA027785790-72201431major capsid L1 protein; Provisional
CDDLate_protein_L15790-72231434L1 (late) protein;
MOTIF_SCAN7164-717512
MOTIF_SCAN5952-596312
MOTIF_SCAN6423-643412
MOTIF_SCAN6621-663212
MOTIF_SCAN6798-680912
MOTIF_SCAN7005-701612
MOTIF_SCAN7101-711212
MOTIF_SCAN6045-605612
MOTIF_SCAN6087-609812
MOTIF_SCAN6771-678212
MOTIF_SCAN6840-685112
MOTIF_SCAN6963-697412
MOTIF_SCAN7011-702212
MOTIF_SCAN7107-711812
MOTIF_SCAN7143-715412
MOTIF_SCAN6090-610718
MOTIF_SCAN6108-612518
MOTIF_SCAN6183-620018
MOTIF_SCAN6618-663518
MOTIF_SCAN6666-668318
MOTIF_SCAN6741-675818
MOTIF_SCAN5901-59099
MOTIF_SCAN5937-59459
MOTIF_SCAN6063-60719
MOTIF_SCAN6420-64289
MOTIF_SCAN6459-64679
MOTIF_SCAN6783-67919
MOTIF_SCAN7023-70319
MOTIF_SCAN7209-72179
MOTIF_SCAN7281-72899
MOTIF_SCAN5796-581924
MOTIF_SCAN7134-716027
MOTIF_SCAN7227-727448
MOTIF_SCAN7227-728054
MOTIF_SCAN5790-72741485
MOTIF_SCAN5790-72741485
INTERPROSCAN5844-71931350
INTERPROSCAN5835-589763
INTERPROSCAN5964-603269
INTERPROSCAN6069-614678
INTERPROSCAN6231-628454
INTERPROSCAN6324-639572
INTERPROSCAN6426-648863
INTERPROSCAN6501-657272
INTERPROSCAN6654-672269
INTERPROSCAN6726-679166
INTERPROSCAN6861-691454
INTERPROSCAN7110-718172
INTERPROSCAN5838-71931356
INTERPROSCAN5793-72711479
MOTIF_SEAR_IN_PROT5790-72831494
MOTIF_SEAR_IN_PROT5790-72741485
MOTIF_SEAR_IN_PROT5793-72711479
PROSITE_SCAN5796-581924
PROSITE_SCAN5901-59099
PROSITE_SCAN5937-59459
PROSITE_SCAN5952-596312
PROSITE_SCAN6045-605612
PROSITE_SCAN6063-60719
PROSITE_SCAN6087-609812
PROSITE_SCAN6090-610718
PROSITE_SCAN6108-612518
PROSITE_SCAN6183-620018
PROSITE_SCAN6420-64289
PROSITE_SCAN6423-643412
PROSITE_SCAN6459-64679
PROSITE_SCAN6618-663518
PROSITE_SCAN6621-663212
PROSITE_SCAN6666-668318
PROSITE_SCAN6741-675818
PROSITE_SCAN6771-678212
PROSITE_SCAN6783-67919
PROSITE_SCAN6798-680912
PROSITE_SCAN6840-685112
PROSITE_SCAN6963-697412
PROSITE_SCAN7005-701612
PROSITE_SCAN7011-702212
PROSITE_SCAN7023-70319
PROSITE_SCAN7101-711212
PROSITE_SCAN7107-711812
PROSITE_SCAN7134-716027
PROSITE_SCAN7143-715412
PROSITE_SCAN7164-717512
PROSITE_SCAN7209-72179
PROSITE_SCAN7227-727448
PROSITE_SCAN7281-72899
SBASE5790-72141425
RADAR6099-619496
RADAR6252-633584
RADAR6972-7094123
RADAR7131-7262132
TMPRED_SERVER6630-668657
TMPRED_SERVER6798-685154
TMPRED_SERVER6891-694151
TMPRED_SERVER6897-695357

Sequence

         .         .         .         .         .         .     G:5849
atgtggcggcctagcgacagcacagtatatgtgcctcctcctaaccctgtatccaaagtt     C:60
M W R P S D S T V Y V P P P N P V S K V      P:20


. . . . . .     G:5909
gttgccacggatgcttatgttactcgcaccaacatattttatcatgccagcagttctaga     C:60
V A T D A Y V T R T N I F Y H A S S S R      P:20


. . . . . .     G:5969
cttcttgcagtgggtcatccttatttttccataaaacgggctaacaaaactgttgtgcca     C:60
L L A V G H P Y F S I K R A N K T V V P      P:20


. . . . . .     G:6029
aaggtgtcaggatatcaatacagggtatttaaggtggtgttaccagatcctaacaaattt     C:60
K V S G Y Q Y R V F K V V L P D P N K F      P:20


. . . . . .     G:6089
gcattgcctgactcgtctctttttgatcccacaacacaacgtttggtatgggcatgcaca     C:60
A L P D S S L F D P T T Q R L V W A C T      P:20


. . . . . .     G:6149
ggcctagaggtgggcaggggacagccattaggtgtgggtgtaagtggacatcctttccta     C:60
G L E V G R G Q P L G V G V S G H P F L      P:20


. . . . . .     G:6209
aataaatatgatgatgttgaaaattcagggagtggtggtaaccctggacaggataacagg     C:60
N K Y D D V E N S G S G G N P G Q D N R      P:20


. . . . . .     G:6269
gttaatgttggtatggattataaacaaacacaattatgcatggttggatgtgccccccct     C:60
V N V G M D Y K Q T Q L C M V G C A P P      P:20


. . . . . .     G:6329
ttgggcgagcattggggtaaaggtaaacagtgtactaatacacctgtacaggctggtgac     C:60
L G E H W G K G K Q C T N T P V Q A G D      P:20


. . . . . .     G:6389
tgcccgcccttagaacttattaccagtgttatacaggatggcgatatggttgacacaggc     C:60
C P P L E L I T S V I Q D G D M V D T G      P:20


. . . . . .     G:6449
tttggtgctatgaattttgctgatttgcagaccaataaatcagatgttcctatttacata     C:60
F G A M N F A D L Q T N K S D V P I Y I      P:20


. . . . . .     G:6509
tgtggcactacatgtaaatatccagattatttacaaatggctgcagacccatatggtgat     C:60
C G T T C K Y P D Y L Q M A A D P Y G D      P:20


. . . . . .     G:6569
agattatttttttttctacggaaggaacaaatgtttgccagacatttttttaacagggct     C:60
R L F F F L R K E Q M F A R H F F N R A      P:20


. . . . . .     G:6629
ggcgaggtgggggaacctgtgcctgatactcttataattaagggtagtggaaatcgaacg     C:60
G E V G E P V P D T L I I K G S G N R T      P:20


. . . . . .     G:6689
tctgtagggagtagtatatatgttaacaccccaagcggctctttggtgtcctctgaggca     C:60
S V G S S I Y V N T P S G S L V S S E A      P:20


. . . . . .     G:6749
caattgtttaataagccatattggctacaaaaagcccagggacataacaatggtatttgt     C:60
Q L F N K P Y W L Q K A Q G H N N G I C      P:20


. . . . . .     G:6809
tggggtaatcaactgtttgttactgtggtagataccacacgcagtaccaacatgacatta     C:60
W G N Q L F V T V V D T T R S T N M T L      P:20


. . . . . .     G:6869
tgtgcatccgtaactacatcttccacatacaccaattctgattataaagagtacatgcgt     C:60
C A S V T T S S T Y T N S D Y K E Y M R      P:20


. . . . . .     G:6929
catgtggaagagtatgatttacaatttatttttcaattatgtagcattacattgtctgct     C:60
H V E E Y D L Q F I F Q L C S I T L S A      P:20


. . . . . .     G:6989
gaagtaatggcctatattcacacaatgaatccctctgttttggaagactggaactttggg     C:60
E V M A Y I H T M N P S V L E D W N F G      P:20


. . . . . .     G:7049
ttatcgcctcccccaaatggtacattagaagatacctataggtatgtgcagtcacaggcc     C:60
L S P P P N G T L E D T Y R Y V Q S Q A      P:20


. . . . . .     G:7109
attacctgtcaaaagcccactcctgaaaaggaaaagccagatccctataagaaccttagt     C:60
I T C Q K P T P E K E K P D P Y K N L S      P:20


. . . . . .     G:7169
ttttgggaggttaatttaaaagaaaagttttctagtgaattggatcagtatcctttggga     C:60
F W E V N L K E K F S S E L D Q Y P L G      P:20


. . . . . .     G:7229
cgcaagtttttgttacaaagtggatataggggacggtcctctattcgtaccggtgttaag     C:60
R K F L L Q S G Y R G R S S I R T G V K      P:20


. . . . . .     G:7289
cgccctgctgtttccaaagcctctgctgcccctaaacgtaagcgcgccaaaaccaaaagg     C:60
R P A V S K A S A A P K R K R A K T K R      P:20


     G:7292
taa      C:3
     P:0