HPV6 E4
Accession: H002801
Protein: E4
Organism: Human papillomavirus type 6
Function
It is responsible for recognition and binding of origin of replication. It exists in two forms such as full length (transcriptional transactivator) and truncated (transcriptional repressor). The ratio of these found in the heterotrimeric complex, formed b
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA03417 | 3256-3501 | 246 | E4 protein; Provisional | |
| MOTIF_SCAN | 3541-3552 | 12 | |||
| MOTIF_SCAN | 3259-3276 | 18 | |||
| MOTIF_SCAN | 3553-3570 | 18 | |||
| MOTIF_SCAN | 3541-3549 | 9 | |||
| MOTIF_SCAN | 3487-3567 | 81 | |||
| MOTIF_SCAN | 3310-3582 | 273 | |||
| MOTIF_SCAN | 3310-3582 | 273 | |||
| INTERPROSCAN | 3310-3582 | 273 | |||
| MOTIF_SEAR_IN_PROT | 3256-3582 | 327 | |||
| MOTIF_SEAR_IN_PROT | 3310-3582 | 273 | |||
| MOTIF_SEAR_IN_PROT | 3301-3582 | 282 | |||
| MOTIF_SEAR_IN_PROT | 3265-3372 | 108 | |||
| MOTIF_SEAR_IN_PROT | 3496-3582 | 87 | |||
| MOTIF_SEAR_IN_PROT | 3310-3582 | 273 | |||
| PROSITE_SCAN | 3259-3276 | 18 | |||
| PROSITE_SCAN | 3541-3549 | 9 | |||
| PROSITE_SCAN | 3541-3552 | 12 | |||
| PROSITE_SCAN | 3553-3570 | 18 | |||
| SBASE | 3406-3582 | 177 | |||
| TMPRED_SERVER | 3277-3333 | 57 |
Sequence
. . . . . . G:3315
atgggagcaccaaacaatgggaagtatgttatggcagcacagttatatgttctcctgcat C:60
M G A P N N G K Y V M A A Q L Y V L L H P:20
. . . . . . G:3375
ctgtatctagcactacacaagaagtatccattcctgaatctactacatacacccccgcac C:60
L Y L A L H K K Y P F L N L L H T P P H P:20
. . . . . . G:3435
agacctccacccctgtgtcctcaagcacccaggaagacgcagtgcaaacgccgcctagaa C:60
R P P P L C P Q A P R K T Q C K R R L E P:20
. . . . . . G:3495
aacgagcacgaggagtccaacagtcaccttgcaacgccttgtgtgtggcccacattggac C:60
N E H E E S N S H L A T P C V W P T L D P:20
. . . . . . G:3555
ccgtggacagtggaaaccacaacgtcatcactaacaatcacgaccagcaccaaagaagga C:60
P W T V E T T T S S L T I T T S T K E G P:20
. . . G:3585
acaacagtaacagttcagctacgcctatag C:30
T T V T V Q L R L P:9