HPV6b L2
Accession: H002798
Protein: L2
Organism: Human papillomavirus type 6b
Function
Minor capsid protein. It is required for DNA packaging. It mediates several facets of viral entry including endosomal escape after uncoating.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA02778 | 4423-5853 | 1431 | major capsid L1 protein; Provisional | |
| CDD | Late_protein_L1 | 4423-5856 | 1434 | L1 (late) protein; | |
| MOTIF_SCAN | 5518-5529 | 12 | |||
| MOTIF_SCAN | 5575-5586 | 12 | |||
| MOTIF_SCAN | 4450-4461 | 12 | |||
| MOTIF_SCAN | 4537-4548 | 12 | |||
| MOTIF_SCAN | 4738-4749 | 12 | |||
| MOTIF_SCAN | 4816-4827 | 12 | |||
| MOTIF_SCAN | 5023-5034 | 12 | |||
| MOTIF_SCAN | 5620-5631 | 12 | |||
| MOTIF_SCAN | 4573-4590 | 18 | |||
| MOTIF_SCAN | 4594-4611 | 18 | |||
| MOTIF_SCAN | 4618-4635 | 18 | |||
| MOTIF_SCAN | 5320-5337 | 18 | |||
| MOTIF_SCAN | 5488-5505 | 18 | |||
| MOTIF_SCAN | 4480-4488 | 9 | |||
| MOTIF_SCAN | 4651-4659 | 9 | |||
| MOTIF_SCAN | 5287-5295 | 9 | |||
| MOTIF_SCAN | 5347-5355 | 9 | |||
| MOTIF_SCAN | 4564-4632 | 69 | |||
| MOTIF_SCAN | 4435-5778 | 1344 | |||
| MOTIF_SCAN | 4435-5778 | 1344 | |||
| MOTIF_SCAN | 4657-4716 | 60 | |||
| INTERPROSCAN | 4441-5460 | 1020 | |||
| MOTIF_SEAR_IN_PROT | 4435-5778 | 1344 | |||
| MOTIF_SEAR_IN_PROT | 4441-5424 | 984 | |||
| MOTIF_SEAR_IN_PROT | 4570-4881 | 312 | |||
| MOTIF_SEAR_IN_PROT | 4654-5103 | 450 | |||
| MOTIF_SEAR_IN_PROT | 4441-5460 | 1020 | |||
| PROSITE_SCAN | 4450-4461 | 12 | |||
| PROSITE_SCAN | 4480-4488 | 9 | |||
| PROSITE_SCAN | 4537-4548 | 12 | |||
| PROSITE_SCAN | 4573-4590 | 18 | |||
| PROSITE_SCAN | 4594-4611 | 18 | |||
| PROSITE_SCAN | 4618-4635 | 18 | |||
| PROSITE_SCAN | 4651-4659 | 9 | |||
| PROSITE_SCAN | 4738-4749 | 12 | |||
| PROSITE_SCAN | 4816-4827 | 12 | |||
| PROSITE_SCAN | 5023-5034 | 12 | |||
| PROSITE_SCAN | 5287-5295 | 9 | |||
| PROSITE_SCAN | 5320-5337 | 18 | |||
| PROSITE_SCAN | 5347-5355 | 9 | |||
| PROSITE_SCAN | 5488-5505 | 18 | |||
| PROSITE_SCAN | 5518-5529 | 12 | |||
| PROSITE_SCAN | 5575-5586 | 12 | |||
| PROSITE_SCAN | 5620-5631 | 12 | |||
| RADAR | 5062-5103 | 42 | |||
| RADAR | 5275-5316 | 42 | |||
| RADAR | 5638-5685 | 48 | |||
| RADAR | 5686-5739 | 54 | |||
| RADAR | 4507-4710 | 204 | |||
| RADAR | 4726-4926 | 201 | |||
| RADAR | 4930-5061 | 132 | |||
| RADAR | 5506-5553 | 48 | |||
| RADAR | 5563-5604 | 42 | |||
| TMPRED_SERVER | 4564-4623 | 60 | |||
| TMPRED_SERVER | 4567-4623 | 57 | |||
| TMPRED_SERVER | 5692-5742 | 51 | |||
| TMPRED_SERVER | 5695-5751 | 57 | |||
| UNIPROTKB | 4423-4458 | 36 | |||
| UNIPROTKB | 5746-5772 | 27 |
Sequence
. . . . . . G:4482
atggcacatagtagggcccgacgacgcaagcgtgcgtcagctacacagctatatcaaaca C:60
M A H S R A R R R K R A S A T Q L Y Q T P:20
. . . . . . G:4542
tgtaaactcactggaacatgccccccagatgtaattcctaaggtggagcacaacaccatt C:60
C K L T G T C P P D V I P K V E H N T I P:20
. . . . . . G:4602
gcagatcaaatattaaaatggggaagtttgggggtgttttttggagggttgggtataggc C:60
A D Q I L K W G S L G V F F G G L G I G P:20
. . . . . . G:4662
acgggttccggcactgggggtcgtactggctatgttcccttacaaacttctgcaaaacct C:60
T G S G T G G R T G Y V P L Q T S A K P P:20
. . . . . . G:4722
tctattactagtgggcctatggctcgtcctcctgtggtggtggagcctgtggccccttcg C:60
S I T S G P M A R P P V V V E P V A P S P:20
. . . . . . G:4782
gatccatctattgtgtctttaattgaagaatcggcaatcattaacgcaggggcgcctgaa C:60
D P S I V S L I E E S A I I N A G A P E P:20
. . . . . . G:4842
attgtgccccctgcacacggtgggtttacaattacatcctctgaaacaactacccctgca C:60
I V P P A H G G F T I T S S E T T T P A P:20
. . . . . . G:4902
atattggatgtatcagttactagtcacactactactagtatatttagaaatcctgtcttt C:60
I L D V S V T S H T T T S I F R N P V F P:20
. . . . . . G:4962
acagaaccttctgtaacacaaccccaaccacccgtggaggctaatggacatatattaatt C:60
T E P S V T Q P Q P P V E A N G H I L I P:20
. . . . . . G:5022
tctgcacccactgtaacgtcacaccctatagaggaaattcctttagatacttttgtggta C:60
S A P T V T S H P I E E I P L D T F V V P:20
. . . . . . G:5082
tcatctagtgatagcggtcctacatccagtacccctgttcctggtactgcacctcggcct C:60
S S S D S G P T S S T P V P G T A P R P P:20
. . . . . . G:5142
cgtgtgggcctatatagtcgtgcattgcaccaggtgcaggttacagaccctgcatttctt C:60
R V G L Y S R A L H Q V Q V T D P A F L P:20
. . . . . . G:5202
tccactcctcaacgcttaattacatatgataaccctgtatatgaaggggaggatgttagt C:60
S T P Q R L I T Y D N P V Y E G E D V S P:20
. . . . . . G:5262
gtacaatttagtcatgattctatacacaatgcacctgatgaggcttttatggacataatt C:60
V Q F S H D S I H N A P D E A F M D I I P:20
. . . . . . G:5322
cgtttgcacagacctgccattgcgtcccgacgtggccttgtgcggtacagtcgcattgga C:60
R L H R P A I A S R R G L V R Y S R I G P:20
. . . . . . G:5382
caacgggggtctatgcacactcgcagcggaaagcacataggggcccgcattcattatttt C:60
Q R G S M H T R S G K H I G A R I H Y F P:20
. . . . . . G:5442
tatgatatttcacctattgcacaggctgcagaagaaatagaaatgcaccctcttgtggct C:60
Y D I S P I A Q A A E E I E M H P L V A P:20
. . . . . . G:5502
gcacaggatgatacatttgatatttatgctgaatcttttgaacctggcattaaccctacc C:60
A Q D D T F D I Y A E S F E P G I N P T P:20
. . . . . . G:5562
caacaccctgttacaaatatatcagatacatatttaacttccacacctaatacagttaca C:60
Q H P V T N I S D T Y L T S T P N T V T P:20
. . . . . . G:5622
caaccgtggggtaacaccacagttccattgtcacttcctaatgacctgtttttacaatct C:60
Q P W G N T T V P L S L P N D L F L Q S P:20
. . . . . . G:5682
ggccctgatataacttttcctactgcacctatgggaacaccctttagtcctgtaactcct C:60
G P D I T F P T A P M G T P F S P V T P P:20
. . . . . . G:5742
gctttacctacaggccctgttttcattacaggttctggattttatttgcatcctgcatgg C:60
A L P T G P V F I T G S G F Y L H P A W P:20
G:5802
tattttgcacgtaaacgccgtaaacgtattcccttatttttttcagatgtggcggcctag C:0
Y F A R K R R K R I P L F F S D V A A P:19
