HPV6b L2

Accession: H002798
Protein: L2
Organism: Human papillomavirus type 6b

Function

Minor capsid protein. It is required for DNA packaging. It mediates several facets of viral entry including endosomal escape after uncoating.

Domain&Motif

method domain/motif name position length description graphical view
CDDPHA027784423-58531431major capsid L1 protein; Provisional
CDDLate_protein_L14423-58561434L1 (late) protein;
MOTIF_SCAN5518-552912
MOTIF_SCAN5575-558612
MOTIF_SCAN4450-446112
MOTIF_SCAN4537-454812
MOTIF_SCAN4738-474912
MOTIF_SCAN4816-482712
MOTIF_SCAN5023-503412
MOTIF_SCAN5620-563112
MOTIF_SCAN4573-459018
MOTIF_SCAN4594-461118
MOTIF_SCAN4618-463518
MOTIF_SCAN5320-533718
MOTIF_SCAN5488-550518
MOTIF_SCAN4480-44889
MOTIF_SCAN4651-46599
MOTIF_SCAN5287-52959
MOTIF_SCAN5347-53559
MOTIF_SCAN4564-463269
MOTIF_SCAN4435-57781344
MOTIF_SCAN4435-57781344
MOTIF_SCAN4657-471660
INTERPROSCAN4441-54601020
MOTIF_SEAR_IN_PROT4435-57781344
MOTIF_SEAR_IN_PROT4441-5424984
MOTIF_SEAR_IN_PROT4570-4881312
MOTIF_SEAR_IN_PROT4654-5103450
MOTIF_SEAR_IN_PROT4441-54601020
PROSITE_SCAN4450-446112
PROSITE_SCAN4480-44889
PROSITE_SCAN4537-454812
PROSITE_SCAN4573-459018
PROSITE_SCAN4594-461118
PROSITE_SCAN4618-463518
PROSITE_SCAN4651-46599
PROSITE_SCAN4738-474912
PROSITE_SCAN4816-482712
PROSITE_SCAN5023-503412
PROSITE_SCAN5287-52959
PROSITE_SCAN5320-533718
PROSITE_SCAN5347-53559
PROSITE_SCAN5488-550518
PROSITE_SCAN5518-552912
PROSITE_SCAN5575-558612
PROSITE_SCAN5620-563112
RADAR5062-510342
RADAR5275-531642
RADAR5638-568548
RADAR5686-573954
RADAR4507-4710204
RADAR4726-4926201
RADAR4930-5061132
RADAR5506-555348
RADAR5563-560442
TMPRED_SERVER4564-462360
TMPRED_SERVER4567-462357
TMPRED_SERVER5692-574251
TMPRED_SERVER5695-575157
UNIPROTKB4423-445836
UNIPROTKB5746-577227

Sequence

         .         .         .         .         .         .     G:4482
atggcacatagtagggcccgacgacgcaagcgtgcgtcagctacacagctatatcaaaca     C:60
M A H S R A R R R K R A S A T Q L Y Q T      P:20


. . . . . .     G:4542
tgtaaactcactggaacatgccccccagatgtaattcctaaggtggagcacaacaccatt     C:60
C K L T G T C P P D V I P K V E H N T I      P:20


. . . . . .     G:4602
gcagatcaaatattaaaatggggaagtttgggggtgttttttggagggttgggtataggc     C:60
A D Q I L K W G S L G V F F G G L G I G      P:20


. . . . . .     G:4662
acgggttccggcactgggggtcgtactggctatgttcccttacaaacttctgcaaaacct     C:60
T G S G T G G R T G Y V P L Q T S A K P      P:20


. . . . . .     G:4722
tctattactagtgggcctatggctcgtcctcctgtggtggtggagcctgtggccccttcg     C:60
S I T S G P M A R P P V V V E P V A P S      P:20


. . . . . .     G:4782
gatccatctattgtgtctttaattgaagaatcggcaatcattaacgcaggggcgcctgaa     C:60
D P S I V S L I E E S A I I N A G A P E      P:20


. . . . . .     G:4842
attgtgccccctgcacacggtgggtttacaattacatcctctgaaacaactacccctgca     C:60
I V P P A H G G F T I T S S E T T T P A      P:20


. . . . . .     G:4902
atattggatgtatcagttactagtcacactactactagtatatttagaaatcctgtcttt     C:60
I L D V S V T S H T T T S I F R N P V F      P:20


. . . . . .     G:4962
acagaaccttctgtaacacaaccccaaccacccgtggaggctaatggacatatattaatt     C:60
T E P S V T Q P Q P P V E A N G H I L I      P:20


. . . . . .     G:5022
tctgcacccactgtaacgtcacaccctatagaggaaattcctttagatacttttgtggta     C:60
S A P T V T S H P I E E I P L D T F V V      P:20


. . . . . .     G:5082
tcatctagtgatagcggtcctacatccagtacccctgttcctggtactgcacctcggcct     C:60
S S S D S G P T S S T P V P G T A P R P      P:20


. . . . . .     G:5142
cgtgtgggcctatatagtcgtgcattgcaccaggtgcaggttacagaccctgcatttctt     C:60
R V G L Y S R A L H Q V Q V T D P A F L      P:20


. . . . . .     G:5202
tccactcctcaacgcttaattacatatgataaccctgtatatgaaggggaggatgttagt     C:60
S T P Q R L I T Y D N P V Y E G E D V S      P:20


. . . . . .     G:5262
gtacaatttagtcatgattctatacacaatgcacctgatgaggcttttatggacataatt     C:60
V Q F S H D S I H N A P D E A F M D I I      P:20


. . . . . .     G:5322
cgtttgcacagacctgccattgcgtcccgacgtggccttgtgcggtacagtcgcattgga     C:60
R L H R P A I A S R R G L V R Y S R I G      P:20


. . . . . .     G:5382
caacgggggtctatgcacactcgcagcggaaagcacataggggcccgcattcattatttt     C:60
Q R G S M H T R S G K H I G A R I H Y F      P:20


. . . . . .     G:5442
tatgatatttcacctattgcacaggctgcagaagaaatagaaatgcaccctcttgtggct     C:60
Y D I S P I A Q A A E E I E M H P L V A      P:20


. . . . . .     G:5502
gcacaggatgatacatttgatatttatgctgaatcttttgaacctggcattaaccctacc     C:60
A Q D D T F D I Y A E S F E P G I N P T      P:20


. . . . . .     G:5562
caacaccctgttacaaatatatcagatacatatttaacttccacacctaatacagttaca     C:60
Q H P V T N I S D T Y L T S T P N T V T      P:20


. . . . . .     G:5622
caaccgtggggtaacaccacagttccattgtcacttcctaatgacctgtttttacaatct     C:60
Q P W G N T T V P L S L P N D L F L Q S      P:20


. . . . . .     G:5682
ggccctgatataacttttcctactgcacctatgggaacaccctttagtcctgtaactcct     C:60
G P D I T F P T A P M G T P F S P V T P      P:20


. . . . . .     G:5742
gctttacctacaggccctgttttcattacaggttctggattttatttgcatcctgcatgg     C:60
A L P T G P V F I T G S G F Y L H P A W      P:20


     G:5802
tattttgcacgtaaacgccgtaaacgtattcccttatttttttcagatgtggcggcctag     C:0
Y F A R K R R K R I P L F F S D V A A      P:19