HPV6b E4
Accession: H002793
Protein: E4
Organism: Human papillomavirus type 6b
Function
It is responsible for recognition and binding of origin of replication. It exists in two forms such as full length (transcriptional transactivator) and truncated (transcriptional repressor). The ratio of these found in the heterotrimeric complex, formed b
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA03417 | 3255-3500 | 246 | E4 protein; Provisional | |
| MOTIF_SCAN | 3540-3551 | 12 | |||
| MOTIF_SCAN | 3552-3569 | 18 | |||
| MOTIF_SCAN | 3540-3548 | 9 | |||
| MOTIF_SCAN | 3486-3566 | 81 | |||
| MOTIF_SCAN | 3309-3581 | 273 | |||
| MOTIF_SCAN | 3309-3581 | 273 | |||
| INTERPROSCAN | 3309-3581 | 273 | |||
| MOTIF_SEAR_IN_PROT | 3255-3581 | 327 | |||
| MOTIF_SEAR_IN_PROT | 3309-3581 | 273 | |||
| MOTIF_SEAR_IN_PROT | 3300-3581 | 282 | |||
| MOTIF_SEAR_IN_PROT | 3495-3581 | 87 | |||
| MOTIF_SEAR_IN_PROT | 3264-3371 | 108 | |||
| MOTIF_SEAR_IN_PROT | 3309-3581 | 273 | |||
| PROSITE_SCAN | 3540-3548 | 9 | |||
| PROSITE_SCAN | 3540-3551 | 12 | |||
| PROSITE_SCAN | 3552-3569 | 18 | |||
| SBASE | 3405-3581 | 177 | |||
| TMPRED_SERVER | 3273-3332 | 60 | |||
| TMPRED_SERVER | 3276-3332 | 57 |
Sequence
. . . . . . G:3314
atgggagcaccaaacattgggaagtatgttatggcagcacagttatatgttctcctgcat C:60
M G A P N I G K Y V M A A Q L Y V L L H P:20
. . . . . . G:3374
ctgtatctagcactacacaagaagtatccattcctgaatctactacatacacccccgcac C:60
L Y L A L H K K Y P F L N L L H T P P H P:20
. . . . . . G:3434
agacctccacccttgtgtcctcaagcaccaaggaagacgcagtgcaaacgccgcctagga C:60
R P P P L C P Q A P R K T Q C K R R L G P:20
. . . . . . G:3494
aacgagcacgaggagtccaacagtccccttgcaacgccttgtgtgtggcccacattggac C:60
N E H E E S N S P L A T P C V W P T L D P:20
. . . . . . G:3554
ccgtggacagtggaaaccacaacctcatcactaacaatcacgaccagcaccaaagacgga C:60
P W T V E T T T S S L T I T T S T K D G P:20
. . . G:3584
acaacagtaacagttcagctacgcctatag C:30
T T V T V Q L R L P:9