HPV6b E2
Accession: H002792
Protein: E2
Organism: Human papillomavirus type 6b
Function
It is responsible for recognition and binding of origin of replication. It exists in two forms such as full length (transcriptional transactivator) and truncated (transcriptional repressor). The ratio of these found in the heterotrimeric complex, formed b
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PPV_E2_N | 2726-3325 | 600 | E2 (early) protein, N terminal; | |
| CDD | PPV_E2_C | 3578-3814 | 237 | E2 (early) protein, C terminal; | |
| MOTIF_SCAN | 2786-2797 | 12 | |||
| MOTIF_SCAN | 3098-3109 | 12 | |||
| MOTIF_SCAN | 3146-3157 | 12 | |||
| MOTIF_SCAN | 3554-3565 | 12 | |||
| MOTIF_SCAN | 2999-3010 | 12 | |||
| MOTIF_SCAN | 3011-3022 | 12 | |||
| MOTIF_SCAN | 3170-3181 | 12 | |||
| MOTIF_SCAN | 3326-3337 | 12 | |||
| MOTIF_SCAN | 3341-3352 | 12 | |||
| MOTIF_SCAN | 3398-3409 | 12 | |||
| MOTIF_SCAN | 3089-3106 | 18 | |||
| MOTIF_SCAN | 3188-3205 | 18 | |||
| MOTIF_SCAN | 3206-3223 | 18 | |||
| MOTIF_SCAN | 3260-3268 | 9 | |||
| MOTIF_SCAN | 3398-3406 | 9 | |||
| MOTIF_SCAN | 3689-3697 | 9 | |||
| MOTIF_SCAN | 3791-3799 | 9 | |||
| MOTIF_SCAN | 3266-3286 | 21 | |||
| MOTIF_SCAN | 3578-3814 | 237 | |||
| MOTIF_SCAN | 2723-3325 | 603 | |||
| MOTIF_SCAN | 3578-3814 | 237 | |||
| MOTIF_SCAN | 2723-3325 | 603 | |||
| INTERPROSCAN | 3026-3325 | 300 | |||
| INTERPROSCAN | 3578-3805 | 228 | |||
| INTERPROSCAN | 2723-3325 | 603 | |||
| INTERPROSCAN | 3572-3817 | 246 | |||
| INTERPROSCAN | 2723-3310 | 588 | |||
| INTERPROSCAN | 3575-3826 | 252 | |||
| INTERPROSCAN | 3533-3820 | 288 | |||
| MOTIF_SEAR_IN_PROT | 2726-3325 | 600 | |||
| MOTIF_SEAR_IN_PROT | 3578-3814 | 237 | |||
| MOTIF_SEAR_IN_PROT | 2798-3082 | 285 | |||
| MOTIF_SEAR_IN_PROT | 3077-3268 | 192 | |||
| MOTIF_SEAR_IN_PROT | 2723-3310 | 588 | |||
| MOTIF_SEAR_IN_PROT | 3578-3805 | 228 | |||
| MOTIF_SEAR_IN_PROT | 2726-2848 | 123 | |||
| PROSITE_SCAN | 2786-2797 | 12 | |||
| PROSITE_SCAN | 2999-3010 | 12 | |||
| PROSITE_SCAN | 3011-3022 | 12 | |||
| PROSITE_SCAN | 3089-3106 | 18 | |||
| PROSITE_SCAN | 3098-3109 | 12 | |||
| PROSITE_SCAN | 3146-3157 | 12 | |||
| PROSITE_SCAN | 3170-3181 | 12 | |||
| PROSITE_SCAN | 3188-3205 | 18 | |||
| PROSITE_SCAN | 3206-3223 | 18 | |||
| PROSITE_SCAN | 3260-3268 | 9 | |||
| PROSITE_SCAN | 3266-3286 | 21 | |||
| PROSITE_SCAN | 3326-3337 | 12 | |||
| PROSITE_SCAN | 3341-3352 | 12 | |||
| PROSITE_SCAN | 3398-3406 | 9 | |||
| PROSITE_SCAN | 3398-3409 | 12 | |||
| PROSITE_SCAN | 3554-3565 | 12 | |||
| PROSITE_SCAN | 3689-3697 | 9 | |||
| PROSITE_SCAN | 3791-3799 | 9 | |||
| SBASE | 2723-3325 | 603 | |||
| SBASE | 3344-3460 | 117 | |||
| SBASE | 3575-3826 | 252 | |||
| RADAR | 2837-2953 | 117 | |||
| RADAR | 2960-3085 | 126 | |||
| RADAR | 3263-3310 | 48 | |||
| RADAR | 3323-3370 | 48 | |||
| RADAR | 3380-3427 | 48 | |||
| TMPRED_SERVER | 3281-3334 | 54 | |||
| TMPRED_SERVER | 3281-3343 | 63 | |||
| UNIPROTKB | 2723-3322 | 600 | |||
| UNIPROTKB | 3572-3826 | 255 |
Sequence
. . . . . . G:2782
atggaagcaatagccaagcgtttagatgcgtgccaggaacagttgttagaactttatgaa C:60
M E A I A K R L D A C Q E Q L L E L Y E P:20
. . . . . . G:2842
gaaaacagtactgacctacacaaacatgtattgcattggaaatgcatgagacatgaaagt C:60
E N S T D L H K H V L H W K C M R H E S P:20
. . . . . . G:2902
gtattattatataaagcaaaacaaatgggcctaagccacataggaatgcaagtagtgcca C:60
V L L Y K A K Q M G L S H I G M Q V V P P:20
. . . . . . G:2962
ccattaaaggtgtccgaagcaaaaggacataatgccattgaaatgcaaatgcatttagaa C:60
P L K V S E A K G H N A I E M Q M H L E P:20
. . . . . . G:3022
tcattattaaggactgagtatagtatggaaccgtggacattacaagaaacaagttatgaa C:60
S L L R T E Y S M E P W T L Q E T S Y E P:20
. . . . . . G:3082
atgtggcaaacaccacctaaacgctgttttaaaaaacggggcaaaactgtagaagttaaa C:60
M W Q T P P K R C F K K R G K T V E V K P:20
. . . . . . G:3142
tttgatggctgtgcaaacaatacaatggattatgtggtatggacagatgtgtatgtgcag C:60
F D G C A N N T M D Y V V W T D V Y V Q P:20
. . . . . . G:3202
gacaatgacacctgggtaaaggtgcatagtatggtagatgctaagggtatatattacaca C:60
D N D T W V K V H S M V D A K G I Y Y T P:20
. . . . . . G:3262
tgtggacaatttaaaacatattatgtaaactttgtaaaagaggcagaaaagtatgggagc C:60
C G Q F K T Y Y V N F V K E A E K Y G S P:20
. . . . . . G:3322
accaaacattgggaagtatgttatggcagcacagttatatgttctcctgcatctgtatct C:60
T K H W E V C Y G S T V I C S P A S V S P:20
. . . . . . G:3382
agcactacacaagaagtatccattcctgaatctactacatacacccccgcacagacctcc C:60
S T T Q E V S I P E S T T Y T P A Q T S P:20
. . . . . . G:3442
acccttgtgtcctcaagcaccaaggaagacgcagtgcaaacgccgcctaggaaacgagca C:60
T L V S S S T K E D A V Q T P P R K R A P:20
. . . . . . G:3502
cgaggagtccaacagtccccttgcaacgccttgtgtgtggcccacattggacccgtggac C:60
R G V Q Q S P C N A L C V A H I G P V D P:20
. . . . . . G:3562
agtggaaaccacaacctcatcactaacaatcacgaccagcaccaaagacggaacaacagt C:60
S G N H N L I T N N H D Q H Q R R N N S P:20
. . . . . . G:3622
aacagttcagctacgcctatagtgcaatttcaaggtgaatccaattgtttaaagtgtttt C:60
N S S A T P I V Q F Q G E S N C L K C F P:20
. . . . . . G:3682
agatataggctaaatgacagacacagacatttatttgatttaatatcatcaacgtggcac C:60
R Y R L N D R H R H L F D L I S S T W H P:20
. . . . . . G:3742
tgggcctcctcaaaggcaccacataaacatgccattgtaactgtaacatatgatagtgag C:60
W A S S K A P H K H A I V T V T Y D S E P:20
. . . . . . G:3802
gaacaaaggcaacagtttttagatgttgtaaaaataccccctaccattagccacaaactg C:60
E Q R Q Q F L D V V K I P P T I S H K L P:20
. . G:3829
ggatttatgtcactgcacctattgtaa C:27
G F M S L H L L P:8
