HPV2 L2
Accession: H002790
Protein: L2
Organism: Human papillomavirus type 2
Function
Minor capsid protein. It is required for DNA packaging. It mediates several facets of viral entry including endosomal escape after uncoating.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | Late_protein_L2 | 4412-5779 | 1368 | Late Protein L2; | |
| MOTIF_SCAN | 5303-5314 | 12 | |||
| MOTIF_SCAN | 4391-4402 | 12 | |||
| MOTIF_SCAN | 4427-4438 | 12 | |||
| MOTIF_SCAN | 5276-5287 | 12 | |||
| MOTIF_SCAN | 5309-5320 | 12 | |||
| MOTIF_SCAN | 4238-4249 | 12 | |||
| MOTIF_SCAN | 4436-4447 | 12 | |||
| MOTIF_SCAN | 4514-4525 | 12 | |||
| MOTIF_SCAN | 4637-4648 | 12 | |||
| MOTIF_SCAN | 4715-4726 | 12 | |||
| MOTIF_SCAN | 4802-4813 | 12 | |||
| MOTIF_SCAN | 5018-5029 | 12 | |||
| MOTIF_SCAN | 5528-5539 | 12 | |||
| MOTIF_SCAN | 5600-5611 | 12 | |||
| MOTIF_SCAN | 5624-5635 | 12 | |||
| MOTIF_SCAN | 4550-4567 | 18 | |||
| MOTIF_SCAN | 4571-4588 | 18 | |||
| MOTIF_SCAN | 4595-4612 | 18 | |||
| MOTIF_SCAN | 4622-4639 | 18 | |||
| MOTIF_SCAN | 5012-5029 | 18 | |||
| MOTIF_SCAN | 4406-4414 | 9 | |||
| MOTIF_SCAN | 4457-4465 | 9 | |||
| MOTIF_SCAN | 4658-4666 | 9 | |||
| MOTIF_SCAN | 5270-5278 | 9 | |||
| MOTIF_SCAN | 5285-5293 | 9 | |||
| MOTIF_SCAN | 5318-5326 | 9 | |||
| MOTIF_SCAN | 5333-5341 | 9 | |||
| MOTIF_SCAN | 5567-5575 | 9 | |||
| MOTIF_SCAN | 4541-4624 | 84 | |||
| MOTIF_SCAN | 4391-4435 | 45 | |||
| MOTIF_SCAN | 4412-5779 | 1368 | |||
| MOTIF_SCAN | 4412-5779 | 1368 | |||
| INTERPROSCAN | 4418-5770 | 1353 | |||
| MOTIF_SEAR_IN_PROT | 4412-5779 | 1368 | |||
| MOTIF_SEAR_IN_PROT | 4418-5416 | 999 | |||
| MOTIF_SEAR_IN_PROT | 4418-5770 | 1353 | |||
| PROSITE_SCAN | 4238-4249 | 12 | |||
| PROSITE_SCAN | 4391-4402 | 12 | |||
| PROSITE_SCAN | 4391-4435 | 45 | |||
| PROSITE_SCAN | 4406-4414 | 9 | |||
| PROSITE_SCAN | 4427-4438 | 12 | |||
| PROSITE_SCAN | 4436-4447 | 12 | |||
| PROSITE_SCAN | 4457-4465 | 9 | |||
| PROSITE_SCAN | 4514-4525 | 12 | |||
| PROSITE_SCAN | 4550-4567 | 18 | |||
| PROSITE_SCAN | 4571-4588 | 18 | |||
| PROSITE_SCAN | 4595-4612 | 18 | |||
| PROSITE_SCAN | 4622-4639 | 18 | |||
| PROSITE_SCAN | 4637-4648 | 12 | |||
| PROSITE_SCAN | 4658-4666 | 9 | |||
| PROSITE_SCAN | 4715-4726 | 12 | |||
| PROSITE_SCAN | 4802-4813 | 12 | |||
| PROSITE_SCAN | 5012-5029 | 18 | |||
| PROSITE_SCAN | 5018-5029 | 12 | |||
| PROSITE_SCAN | 5270-5278 | 9 | |||
| PROSITE_SCAN | 5276-5287 | 12 | |||
| PROSITE_SCAN | 5285-5293 | 9 | |||
| PROSITE_SCAN | 5303-5314 | 12 | |||
| PROSITE_SCAN | 5309-5320 | 12 | |||
| PROSITE_SCAN | 5318-5326 | 9 | |||
| PROSITE_SCAN | 5333-5341 | 9 | |||
| PROSITE_SCAN | 5528-5539 | 12 | |||
| PROSITE_SCAN | 5567-5575 | 9 | |||
| PROSITE_SCAN | 5600-5611 | 12 | |||
| PROSITE_SCAN | 5624-5635 | 12 | |||
| SBASE | 4412-5779 | 1368 | |||
| RADAR | 4442-4633 | 192 | |||
| RADAR | 4634-4816 | 183 | |||
| RADAR | 4817-5047 | 231 | |||
| RADAR | 5072-5209 | 138 | |||
| RADAR | 5210-5446 | 237 | |||
| RADAR | 5450-5683 | 234 | |||
| TMPRED_SERVER | 4328-4384 | 57 | |||
| TMPRED_SERVER | 4331-4384 | 54 | |||
| TMPRED_SERVER | 4538-4588 | 51 | |||
| TMPRED_SERVER | 4544-4603 | 60 | |||
| TMPRED_SERVER | 4838-4894 | 57 | |||
| TMPRED_SERVER | 5528-5578 | 51 | |||
| TMPRED_SERVER | 5555-5608 | 54 | |||
| TMPRED_SERVER | 5666-5719 | 54 | |||
| TMPRED_SERVER | 5672-5731 | 60 |
Sequence
. . . . . . G:4294
atgtctgttggtgattcttatcctaatcgcctttttattgttgatgttttatgtccgttt C:60
M S V G D S Y P N R L F I V D V L C P F P:20
. . . . . . G:4354
gttaaaccacacctaacacccccacttttttatattgttttgatacattttcattttgat C:60
V K P H L T P P L F Y I V L I H F H F D P:20
. . . . . . G:4414
acatttgtgttttttttgtatttgctgcgttttaataaacgtgcaaccatgtctatacgt C:60
T F V F F L Y L L R F N K R A T M S I R P:20
. . . . . . G:4474
gccaagcgtcgaaagcgcgcctcccccacagacctctatcgtacctgcaagcaggcaggt C:60
A K R R K R A S P T D L Y R T C K Q A G P:20
. . . . . . G:4534
acctgccccccagacattatcccaagagtggaacagaacactttagcagataaaatcctt C:60
T C P P D I I P R V E Q N T L A D K I L P:20
. . . . . . G:4594
aagtggggcagtttaggtgtgttttttgggggtctaggtataggcaccggcagcggcaca C:60
K W G S L G V F F G G L G I G T G S G T P:20
. . . . . . G:4654
ggggggcgtactgggtacattcctgtaggttcgcgacccaccactgtagttgacattggt C:60
G G R T G Y I P V G S R P T T V V D I G P:20
. . . . . . G:4714
ccaacgcccaggccgcctgttatcattgaacctgtgggggcctctgaaccctctattgtc C:60
P T P R P P V I I E P V G A S E P S I V P:20
. . . . . . G:4774
actttggtggaggactctagcatcattaacgcaggagcgtcacatcccacctttactggt C:60
T L V E D S S I I N A G A S H P T F T G P:20
. . . . . . G:4834
actggtggcttcgaagtgacaacctccaccgttacagaccccgccgtcttggatatcacc C:60
T G G F E V T T S T V T D P A V L D I T P:20
. . . . . . G:4894
ccctcaggtaccagtgtgcaggtcagcagcagtagctttcttaacccactatacactgag C:60
P S G T S V Q V S S S S F L N P L Y T E P:20
. . . . . . G:4954
ccagctattgtggaggctccccaaacaggggaagtatctggccatgtacttgttagtaca C:60
P A I V E A P Q T G E V S G H V L V S T P:20
. . . . . . G:5014
gccacctcagggtctcatggctatgaggaaataccaatgcagacgtttgccacgtcgggg C:60
A T S G S H G Y E E I P M Q T F A T S G P:20
. . . . . . G:5074
ggcagcggtacagagcctatcagtagcacacccctccctggcgtgcggagagttgccgga C:60
G S G T E P I S S T P L P G V R R V A G P:20
. . . . . . G:5134
ccccgcctgtacagtagagccaatcagcaagtgcaagtcagggatcctgcgtttcttgca C:60
P R L Y S R A N Q Q V Q V R D P A F L A P:20
. . . . . . G:5194
aggcctgctgatctagtaacatttgacaatcctgtgtatgacccagaggaaactataata C:60
R P A D L V T F D N P V Y D P E E T I I P:20
. . . . . . G:5254
tttcagcatccagacttgcatgagccaccggatcctgattttttggacatagtggcgttg C:60
F Q H P D L H E P P D P D F L D I V A L P:20
. . . . . . G:5314
catcgtcccgccctcacgtccagaaggggtactgtccgttttagtaggttgggacgcagg C:60
H R P A L T S R R G T V R F S R L G R R P:20
. . . . . . G:5374
gctacactccgcacccgtagtggtaaacaaattggggcacgggtgcacttctatcatgat C:60
A T L R T R S G K Q I G A R V H F Y H D P:20
. . . . . . G:5434
attagccctataggtactgaggagttggagatggagccactgttgcccccagcttctact C:60
I S P I G T E E L E M E P L L P P A S T P:20
. . . . . . G:5494
gataacacagatatgttatatgatgtttatgctgattcggatgtccttcagccattgctt C:60
D N T D M L Y D V Y A D S D V L Q P L L P:20
. . . . . . G:5554
gatgagttacccgccgcccctcgcggttcactctctctggctgacactgctgtgtctgcc C:60
D E L P A A P R G S L S L A D T A V S A P:20
. . . . . . G:5614
acctccgcatctacactacgggggtccactactgtccctttatcaagtggtattgatgtg C:60
T S A S T L R G S T T V P L S S G I D V P:20
. . . . . . G:5674
cctgtgtacaccggtcctgacattgaaccacccaatgttcctggcatgggacctctgatt C:60
P V Y T G P D I E P P N V P G M G P L I P:20
. . . . . . G:5734
cctgtggctccatccttaccatcgtctgtgtacatatttgggggagattattatttgatg C:60
P V A P S L P S S V Y I F G G D Y Y L M P:20
. . . . . . G:5794
ccaagttatgtcttgtggcctaaacgacgtaaacgtgtccactatttctttgcagatggc C:60
P S Y V L W P K R R K R V H Y F F A D G P:20
. G:5809
tttgtggcggcctaa C:15
F V A A P:4
