HPV2 L1
Accession: H002789
Protein: L1
Organism: Human papillomavirus type 2
Function
Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA02778 | 5790-7271 | 1482 | major capsid L1 protein; Provisional | |
| MOTIF_SCAN | 7161-7172 | 12 | |||
| MOTIF_SCAN | 5766-5777 | 12 | |||
| MOTIF_SCAN | 5808-5819 | 12 | |||
| MOTIF_SCAN | 6216-6227 | 12 | |||
| MOTIF_SCAN | 6306-6317 | 12 | |||
| MOTIF_SCAN | 6351-6362 | 12 | |||
| MOTIF_SCAN | 6423-6434 | 12 | |||
| MOTIF_SCAN | 6795-6806 | 12 | |||
| MOTIF_SCAN | 6195-6206 | 12 | |||
| MOTIF_SCAN | 6354-6365 | 12 | |||
| MOTIF_SCAN | 6585-6596 | 12 | |||
| MOTIF_SCAN | 6768-6779 | 12 | |||
| MOTIF_SCAN | 7008-7019 | 12 | |||
| MOTIF_SCAN | 7077-7088 | 12 | |||
| MOTIF_SCAN | 7104-7115 | 12 | |||
| MOTIF_SCAN | 6036-6053 | 18 | |||
| MOTIF_SCAN | 6096-6113 | 18 | |||
| MOTIF_SCAN | 6114-6131 | 18 | |||
| MOTIF_SCAN | 6294-6311 | 18 | |||
| MOTIF_SCAN | 6567-6584 | 18 | |||
| MOTIF_SCAN | 6663-6680 | 18 | |||
| MOTIF_SCAN | 6738-6755 | 18 | |||
| MOTIF_SCAN | 7188-7205 | 18 | |||
| MOTIF_SCAN | 5904-5912 | 9 | |||
| MOTIF_SCAN | 5940-5948 | 9 | |||
| MOTIF_SCAN | 6069-6077 | 9 | |||
| MOTIF_SCAN | 6420-6428 | 9 | |||
| MOTIF_SCAN | 6459-6467 | 9 | |||
| MOTIF_SCAN | 6522-6530 | 9 | |||
| MOTIF_SCAN | 6780-6788 | 9 | |||
| MOTIF_SCAN | 7020-7028 | 9 | |||
| MOTIF_SCAN | 7206-7214 | 9 | |||
| MOTIF_SCAN | 7245-7253 | 9 | |||
| MOTIF_SCAN | 5802-5825 | 24 | |||
| MOTIF_SCAN | 7212-7262 | 51 | |||
| MOTIF_SCAN | 7167-7220 | 54 | |||
| MOTIF_SCAN | 7212-7265 | 54 | |||
| MOTIF_SCAN | 5790-7262 | 1473 | |||
| MOTIF_SCAN | 7176-7217 | 42 | |||
| MOTIF_SCAN | 5814-5840 | 27 | |||
| MOTIF_SCAN | 5790-7262 | 1473 | |||
| MOTIF_SCAN | 5814-5840 | 27 | |||
| INTERPROSCAN | 5841-7190 | 1350 | |||
| INTERPROSCAN | 5838-5900 | 63 | |||
| INTERPROSCAN | 5970-6038 | 69 | |||
| INTERPROSCAN | 6075-6152 | 78 | |||
| INTERPROSCAN | 6234-6287 | 54 | |||
| INTERPROSCAN | 6324-6395 | 72 | |||
| INTERPROSCAN | 6426-6488 | 63 | |||
| INTERPROSCAN | 6501-6572 | 72 | |||
| INTERPROSCAN | 6651-6719 | 69 | |||
| INTERPROSCAN | 6723-6788 | 66 | |||
| INTERPROSCAN | 6858-6911 | 54 | |||
| INTERPROSCAN | 7107-7178 | 72 | |||
| INTERPROSCAN | 5799-7262 | 1464 | |||
| INTERPROSCAN | 5847-7190 | 1344 | |||
| MOTIF_SEAR_IN_PROT | 535-804 | 270 | |||
| MOTIF_SEAR_IN_PROT | 529-804 | 276 | |||
| MOTIF_SEAR_IN_PROT | 595-663 | 69 | |||
| MOTIF_SEAR_IN_PROT | 721-804 | 84 | |||
| MOTIF_SEAR_IN_PROT | 535-801 | 267 | |||
| MOTIF_SEAR_IN_PROT | 688-711 | 24 | |||
| MOTIF_SEAR_IN_PROT | 5790-7271 | 1482 | |||
| MOTIF_SEAR_IN_PROT | 5796-7262 | 1467 | |||
| MOTIF_SEAR_IN_PROT | 5799-7262 | 1464 | |||
| PROSITE_SCAN | 5766-5777 | 12 | |||
| PROSITE_SCAN | 5802-5825 | 24 | |||
| PROSITE_SCAN | 5808-5819 | 12 | |||
| PROSITE_SCAN | 5904-5912 | 9 | |||
| PROSITE_SCAN | 5940-5948 | 9 | |||
| PROSITE_SCAN | 6036-6053 | 18 | |||
| PROSITE_SCAN | 6069-6077 | 9 | |||
| PROSITE_SCAN | 6096-6113 | 18 | |||
| PROSITE_SCAN | 6114-6131 | 18 | |||
| PROSITE_SCAN | 6195-6206 | 12 | |||
| PROSITE_SCAN | 6216-6227 | 12 | |||
| PROSITE_SCAN | 6294-6311 | 18 | |||
| PROSITE_SCAN | 6306-6317 | 12 | |||
| PROSITE_SCAN | 6351-6362 | 12 | |||
| PROSITE_SCAN | 6354-6365 | 12 | |||
| PROSITE_SCAN | 6420-6428 | 9 | |||
| PROSITE_SCAN | 6423-6434 | 12 | |||
| PROSITE_SCAN | 6459-6467 | 9 | |||
| PROSITE_SCAN | 6522-6530 | 9 | |||
| PROSITE_SCAN | 6567-6584 | 18 | |||
| PROSITE_SCAN | 6585-6596 | 12 | |||
| PROSITE_SCAN | 6663-6680 | 18 | |||
| PROSITE_SCAN | 6738-6755 | 18 | |||
| PROSITE_SCAN | 6768-6779 | 12 | |||
| PROSITE_SCAN | 6780-6788 | 9 | |||
| PROSITE_SCAN | 6795-6806 | 12 | |||
| PROSITE_SCAN | 7008-7019 | 12 | |||
| PROSITE_SCAN | 7020-7028 | 9 | |||
| PROSITE_SCAN | 7077-7088 | 12 | |||
| PROSITE_SCAN | 7104-7115 | 12 | |||
| PROSITE_SCAN | 7161-7172 | 12 | |||
| PROSITE_SCAN | 7188-7205 | 18 | |||
| PROSITE_SCAN | 7206-7214 | 9 | |||
| PROSITE_SCAN | 7212-7262 | 51 | |||
| PROSITE_SCAN | 7245-7253 | 9 | |||
| SBASE | 5790-7268 | 1479 | |||
| RADAR | 6168-6623 | 456 | |||
| RADAR | 6624-7049 | 426 | |||
| RADAR | 5757-5939 | 183 | |||
| RADAR | 5958-6155 | 198 | |||
| TMPRED_SERVER | 5748-5804 | 57 |
Sequence
. . . . . . G:5801
atgtcttgtggcctaaacgacgtaaacgtgtccactatttctttgcagatggctttgtgg C:60
M S C G L N D V N V S T I S L Q M A L W P:20
. . . . . . G:5861
cggcctaatgaaagcaaggtatacctacctccaacacctgtttcaaaggtgatcagtacg C:60
R P N E S K V Y L P P T P V S K V I S T P:20
. . . . . . G:5921
gatgtctatgtcacgcggactaatgtgtattaccatggtggcagttctaggcttctcact C:60
D V Y V T R T N V Y Y H G G S S R L L T P:20
. . . . . . G:5981
gtgggtcatccatattactctataaagaagagtaataataaggtggctgtgcccaaggta C:60
V G H P Y Y S I K K S N N K V A V P K V P:20
. . . . . . G:6041
tctgggtaccaatatcgtgtatttcacgtgaagttgccagatccaaataagtttggcctg C:60
S G Y Q Y R V F H V K L P D P N K F G L P:20
. . . . . . G:6101
cccgatgctgatttgtatgatccagatacccagagacttctgtgggcgtgcgtgggagta C:60
P D A D L Y D P D T Q R L L W A C V G V P:20
. . . . . . G:6161
gaggtgggccgtgggcagcctttgggtgtgggtgtgtctggtcacccatattacaataga C:60
E V G R G Q P L G V G V S G H P Y Y N R P:20
. . . . . . G:6221
ctggatgacactgaaaatgcacacacacctgatacagctgatgatggcagggaaaacatt C:60
L D D T E N A H T P D T A D D G R E N I P:20
. . . . . . G:6281
tctatggattataaacagacacagctgttcattctgggctgcaaaccccctattggtgag C:60
S M D Y K Q T Q L F I L G C K P P I G E P:20
. . . . . . G:6341
cactggtctaagggtaccacctgtaatgggtcttctgctgctggtgactgcccgcccctc C:60
H W S K G T T C N G S S A A G D C P P L P:20
. . . . . . G:6401
caatttactaacacaactattgaggacggggatatggttgaaacagggttcggtgccttg C:60
Q F T N T T I E D G D M V E T G F G A L P:20
. . . . . . G:6461
gattttgccactctgcagtcaaataagtcagatgttcctttggatatttgtaccaatacc C:60
D F A T L Q S N K S D V P L D I C T N T P:20
. . . . . . G:6521
tgtaaatatcctgattatctgaagatggctgcagagccttatggtgattctatgttcttc C:60
C K Y P D Y L K M A A E P Y G D S M F F P:20
. . . . . . G:6581
tcgctgcgtagggaacaaatgttcactcgtcattttttcaatctgggtggtaagatgggt C:60
S L R R E Q M F T R H F F N L G G K M G P:20
. . . . . . G:6641
gacaccatcccggatgagttatacattaaaagtacctcagttccaactccaggcagtcat C:60
D T I P D E L Y I K S T S V P T P G S H P:20
. . . . . . G:6701
gtttatacttccactcctagtggctctatggtgtcctctgaacaacagttgtttaataag C:60
V Y T S T P S G S M V S S E Q Q L F N K P:20
. . . . . . G:6761
ccttactggctacggagggcccaagggcacaacaatggtatgtgctggggcaatagggtc C:60
P Y W L R R A Q G H N N G M C W G N R V P:20
. . . . . . G:6821
tttctgactgtggtggacaccacacgtagcactaatgtatctctgtgtgccactgaggcg C:60
F L T V V D T T R S T N V S L C A T E A P:20
. . . . . . G:6881
tctgatactaattataaggctaccaattttaaggaatatctcaggcatatggaggaatat C:60
S D T N Y K A T N F K E Y L R H M E E Y P:20
. . . . . . G:6941
gatttgcagttcatcttccaactgtgcaagataacccttactcctgaaattatggcctat C:60
D L Q F I F Q L C K I T L T P E I M A Y P:20
. . . . . . G:7001
atacataatatggatccccagttgttagaggattggaacttcggtgtaccccctccgccg C:60
I H N M D P Q L L E D W N F G V P P P P P:20
. . . . . . G:7061
tctgccagtttacaggatacctatagatatttgcagtcccaggctattacatgtcaaaaa C:60
S A S L Q D T Y R Y L Q S Q A I T C Q K P:20
. . . . . . G:7121
cctacacctcctaagacccctaccgatccctatgcctccctgaccttttgggatgtggat C:60
P T P P K T P T D P Y A S L T F W D V D P:20
. . . . . . G:7181
ctcagtgaaagtttttccatggatctggaccaatttcccttgggtcgcaagtttttgctg C:60
L S E S F S M D L D Q F P L G R K F L L P:20
. . . . . . G:7241
cagcggggggctatgcctaccgtgtctcgcaagcgcgccgctgtttcggggaccacgccg C:60
Q R G A M P T V S R K R A A V S G T T P P:20
. . . G:7274
cccactagtaaacgaaaacgggtaaggcgttag C:33
P T S K R K R V R R P:10
