HPV2 L1

Accession: H002789
Protein: L1
Organism: Human papillomavirus type 2

Function

Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.

Domain&Motif

method domain/motif name position length description graphical view
CDDPHA027785790-72711482major capsid L1 protein; Provisional
MOTIF_SCAN7161-717212
MOTIF_SCAN5766-577712
MOTIF_SCAN5808-581912
MOTIF_SCAN6216-622712
MOTIF_SCAN6306-631712
MOTIF_SCAN6351-636212
MOTIF_SCAN6423-643412
MOTIF_SCAN6795-680612
MOTIF_SCAN6195-620612
MOTIF_SCAN6354-636512
MOTIF_SCAN6585-659612
MOTIF_SCAN6768-677912
MOTIF_SCAN7008-701912
MOTIF_SCAN7077-708812
MOTIF_SCAN7104-711512
MOTIF_SCAN6036-605318
MOTIF_SCAN6096-611318
MOTIF_SCAN6114-613118
MOTIF_SCAN6294-631118
MOTIF_SCAN6567-658418
MOTIF_SCAN6663-668018
MOTIF_SCAN6738-675518
MOTIF_SCAN7188-720518
MOTIF_SCAN5904-59129
MOTIF_SCAN5940-59489
MOTIF_SCAN6069-60779
MOTIF_SCAN6420-64289
MOTIF_SCAN6459-64679
MOTIF_SCAN6522-65309
MOTIF_SCAN6780-67889
MOTIF_SCAN7020-70289
MOTIF_SCAN7206-72149
MOTIF_SCAN7245-72539
MOTIF_SCAN5802-582524
MOTIF_SCAN7212-726251
MOTIF_SCAN7167-722054
MOTIF_SCAN7212-726554
MOTIF_SCAN5790-72621473
MOTIF_SCAN7176-721742
MOTIF_SCAN5814-584027
MOTIF_SCAN5790-72621473
MOTIF_SCAN5814-584027
INTERPROSCAN5841-71901350
INTERPROSCAN5838-590063
INTERPROSCAN5970-603869
INTERPROSCAN6075-615278
INTERPROSCAN6234-628754
INTERPROSCAN6324-639572
INTERPROSCAN6426-648863
INTERPROSCAN6501-657272
INTERPROSCAN6651-671969
INTERPROSCAN6723-678866
INTERPROSCAN6858-691154
INTERPROSCAN7107-717872
INTERPROSCAN5799-72621464
INTERPROSCAN5847-71901344
MOTIF_SEAR_IN_PROT535-804270
MOTIF_SEAR_IN_PROT529-804276
MOTIF_SEAR_IN_PROT595-66369
MOTIF_SEAR_IN_PROT721-80484
MOTIF_SEAR_IN_PROT535-801267
MOTIF_SEAR_IN_PROT688-71124
MOTIF_SEAR_IN_PROT5790-72711482
MOTIF_SEAR_IN_PROT5796-72621467
MOTIF_SEAR_IN_PROT5799-72621464
PROSITE_SCAN5766-577712
PROSITE_SCAN5802-582524
PROSITE_SCAN5808-581912
PROSITE_SCAN5904-59129
PROSITE_SCAN5940-59489
PROSITE_SCAN6036-605318
PROSITE_SCAN6069-60779
PROSITE_SCAN6096-611318
PROSITE_SCAN6114-613118
PROSITE_SCAN6195-620612
PROSITE_SCAN6216-622712
PROSITE_SCAN6294-631118
PROSITE_SCAN6306-631712
PROSITE_SCAN6351-636212
PROSITE_SCAN6354-636512
PROSITE_SCAN6420-64289
PROSITE_SCAN6423-643412
PROSITE_SCAN6459-64679
PROSITE_SCAN6522-65309
PROSITE_SCAN6567-658418
PROSITE_SCAN6585-659612
PROSITE_SCAN6663-668018
PROSITE_SCAN6738-675518
PROSITE_SCAN6768-677912
PROSITE_SCAN6780-67889
PROSITE_SCAN6795-680612
PROSITE_SCAN7008-701912
PROSITE_SCAN7020-70289
PROSITE_SCAN7077-708812
PROSITE_SCAN7104-711512
PROSITE_SCAN7161-717212
PROSITE_SCAN7188-720518
PROSITE_SCAN7206-72149
PROSITE_SCAN7212-726251
PROSITE_SCAN7245-72539
SBASE5790-72681479
RADAR6168-6623456
RADAR6624-7049426
RADAR5757-5939183
RADAR5958-6155198
TMPRED_SERVER5748-580457

Sequence

         .         .         .         .         .         .     G:5801
atgtcttgtggcctaaacgacgtaaacgtgtccactatttctttgcagatggctttgtgg     C:60
M S C G L N D V N V S T I S L Q M A L W      P:20


. . . . . .     G:5861
cggcctaatgaaagcaaggtatacctacctccaacacctgtttcaaaggtgatcagtacg     C:60
R P N E S K V Y L P P T P V S K V I S T      P:20


. . . . . .     G:5921
gatgtctatgtcacgcggactaatgtgtattaccatggtggcagttctaggcttctcact     C:60
D V Y V T R T N V Y Y H G G S S R L L T      P:20


. . . . . .     G:5981
gtgggtcatccatattactctataaagaagagtaataataaggtggctgtgcccaaggta     C:60
V G H P Y Y S I K K S N N K V A V P K V      P:20


. . . . . .     G:6041
tctgggtaccaatatcgtgtatttcacgtgaagttgccagatccaaataagtttggcctg     C:60
S G Y Q Y R V F H V K L P D P N K F G L      P:20


. . . . . .     G:6101
cccgatgctgatttgtatgatccagatacccagagacttctgtgggcgtgcgtgggagta     C:60
P D A D L Y D P D T Q R L L W A C V G V      P:20


. . . . . .     G:6161
gaggtgggccgtgggcagcctttgggtgtgggtgtgtctggtcacccatattacaataga     C:60
E V G R G Q P L G V G V S G H P Y Y N R      P:20


. . . . . .     G:6221
ctggatgacactgaaaatgcacacacacctgatacagctgatgatggcagggaaaacatt     C:60
L D D T E N A H T P D T A D D G R E N I      P:20


. . . . . .     G:6281
tctatggattataaacagacacagctgttcattctgggctgcaaaccccctattggtgag     C:60
S M D Y K Q T Q L F I L G C K P P I G E      P:20


. . . . . .     G:6341
cactggtctaagggtaccacctgtaatgggtcttctgctgctggtgactgcccgcccctc     C:60
H W S K G T T C N G S S A A G D C P P L      P:20


. . . . . .     G:6401
caatttactaacacaactattgaggacggggatatggttgaaacagggttcggtgccttg     C:60
Q F T N T T I E D G D M V E T G F G A L      P:20


. . . . . .     G:6461
gattttgccactctgcagtcaaataagtcagatgttcctttggatatttgtaccaatacc     C:60
D F A T L Q S N K S D V P L D I C T N T      P:20


. . . . . .     G:6521
tgtaaatatcctgattatctgaagatggctgcagagccttatggtgattctatgttcttc     C:60
C K Y P D Y L K M A A E P Y G D S M F F      P:20


. . . . . .     G:6581
tcgctgcgtagggaacaaatgttcactcgtcattttttcaatctgggtggtaagatgggt     C:60
S L R R E Q M F T R H F F N L G G K M G      P:20


. . . . . .     G:6641
gacaccatcccggatgagttatacattaaaagtacctcagttccaactccaggcagtcat     C:60
D T I P D E L Y I K S T S V P T P G S H      P:20


. . . . . .     G:6701
gtttatacttccactcctagtggctctatggtgtcctctgaacaacagttgtttaataag     C:60
V Y T S T P S G S M V S S E Q Q L F N K      P:20


. . . . . .     G:6761
ccttactggctacggagggcccaagggcacaacaatggtatgtgctggggcaatagggtc     C:60
P Y W L R R A Q G H N N G M C W G N R V      P:20


. . . . . .     G:6821
tttctgactgtggtggacaccacacgtagcactaatgtatctctgtgtgccactgaggcg     C:60
F L T V V D T T R S T N V S L C A T E A      P:20


. . . . . .     G:6881
tctgatactaattataaggctaccaattttaaggaatatctcaggcatatggaggaatat     C:60
S D T N Y K A T N F K E Y L R H M E E Y      P:20


. . . . . .     G:6941
gatttgcagttcatcttccaactgtgcaagataacccttactcctgaaattatggcctat     C:60
D L Q F I F Q L C K I T L T P E I M A Y      P:20


. . . . . .     G:7001
atacataatatggatccccagttgttagaggattggaacttcggtgtaccccctccgccg     C:60
I H N M D P Q L L E D W N F G V P P P P      P:20


. . . . . .     G:7061
tctgccagtttacaggatacctatagatatttgcagtcccaggctattacatgtcaaaaa     C:60
S A S L Q D T Y R Y L Q S Q A I T C Q K      P:20


. . . . . .     G:7121
cctacacctcctaagacccctaccgatccctatgcctccctgaccttttgggatgtggat     C:60
P T P P K T P T D P Y A S L T F W D V D      P:20


. . . . . .     G:7181
ctcagtgaaagtttttccatggatctggaccaatttcccttgggtcgcaagtttttgctg     C:60
L S E S F S M D L D Q F P L G R K F L L      P:20


. . . . . .     G:7241
cagcggggggctatgcctaccgtgtctcgcaagcgcgccgctgtttcggggaccacgccg     C:60
Q R G A M P T V S R K R A A V S G T T P      P:20


. . .      G:7274
cccactagtaaacgaaaacgggtaaggcgttag      C:33
P T S K R K R V R R      P:10