HPV16 L1

Accession: H002783
Protein: L1
Organism: Human papillomavirus type 16

Function

Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.

Mutation

5560-5600
5601-5700
5701-5800
5801-5900
5901-6000
6001-6100
6101-6200
6201-6300
6301-6400
6401-6500
6501-6600
6601-6700
6701-6800
6801-6900
6901-7000
7001-7100
7101-7155
Legend:same sensemissenseinsertiondeletion
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Domain&Motif

method domain/motif name position length description graphical view
CDDPHA027785638-70741437major capsid L1 protein; Provisional
CDDLate_protein_L15644-70801437L1 (late) protein;
MOTIF_SCAN7027-703812
MOTIF_SCAN7081-709212
MOTIF_SCAN6028-603912
MOTIF_SCAN6283-629412
MOTIF_SCAN6658-666912
MOTIF_SCAN6820-683112
MOTIF_SCAN6961-697212
MOTIF_SCAN7090-710112
MOTIF_SCAN5593-560412
MOTIF_SCAN5704-571512
MOTIF_SCAN6433-644412
MOTIF_SCAN6631-664212
MOTIF_SCAN6682-669312
MOTIF_SCAN6826-683712
MOTIF_SCAN6874-688512
MOTIF_SCAN6970-698112
MOTIF_SCAN5947-596418
MOTIF_SCAN5965-598218
MOTIF_SCAN6151-616818
MOTIF_SCAN6472-648918
MOTIF_SCAN6526-654318
MOTIF_SCAN6601-661818
MOTIF_SCAN5752-57609
MOTIF_SCAN5920-59289
MOTIF_SCAN6643-66519
MOTIF_SCAN6697-67059
MOTIF_SCAN6886-68949
MOTIF_SCAN7126-71349
MOTIF_SCAN5560-557718
MOTIF_SCAN7090-714051
MOTIF_SCAN7090-714354
MOTIF_SCAN5638-71431506
MOTIF_SCAN5662-568827
MOTIF_SCAN5638-71431506
MOTIF_SCAN5662-568827
INTERPROSCAN5686-574863
INTERPROSCAN5821-588969
INTERPROSCAN5926-600378
INTERPROSCAN6091-614454
INTERPROSCAN6184-625572
INTERPROSCAN6286-634863
INTERPROSCAN6361-643272
INTERPROSCAN6514-658269
INTERPROSCAN6586-665166
INTERPROSCAN6724-677754
INTERPROSCAN6973-704472
INTERPROSCAN5689-70561368
INTERPROSCAN5647-71431497
INTERPROSCAN5695-70591365
MOTIF_SEAR_IN_PROT5638-71491512
MOTIF_SEAR_IN_PROT5644-71431500
MOTIF_SEAR_IN_PROT5695-578490
MOTIF_SEAR_IN_PROT5647-71431497
PROSITE_SCAN5593-560412
PROSITE_SCAN5704-571512
PROSITE_SCAN5752-57609
PROSITE_SCAN5920-59289
PROSITE_SCAN5947-596418
PROSITE_SCAN5965-598218
PROSITE_SCAN6028-603912
PROSITE_SCAN6151-616818
PROSITE_SCAN6283-629412
PROSITE_SCAN6433-644412
PROSITE_SCAN6472-648918
PROSITE_SCAN6526-654318
PROSITE_SCAN6601-661818
PROSITE_SCAN6631-664212
PROSITE_SCAN6643-66519
PROSITE_SCAN6658-666912
PROSITE_SCAN6682-669312
PROSITE_SCAN6697-67059
PROSITE_SCAN6820-683112
PROSITE_SCAN6826-683712
PROSITE_SCAN6874-688512
PROSITE_SCAN6886-68949
PROSITE_SCAN6961-697212
PROSITE_SCAN6970-698112
PROSITE_SCAN7027-703812
PROSITE_SCAN7081-709212
PROSITE_SCAN7090-710112
PROSITE_SCAN7126-71349
SBASE5638-70711434
RADAR5785-583551
RADAR5854-590451
RADAR6922-696948
RADAR6979-703860
RADAR7048-709245
TMPRED_SERVER5560-561657
TMPRED_SERVER5614-567966
TMPRED_SERVER5647-570660
TMPRED_SERVER6772-682251

Sequence

         .         .         .         .         .         .     G:5619
atgcaggtgacttttatttacatcctagttattacatgttacgaaaacgacgtaaacgtt     C:60
M Q V T F I Y I L V I T C Y E N D V N V      P:20


. . . . . .     G:5679
taccatattttttttcagatgtctctttggctgcctagtgaggccactgtctacttgcct     C:60
Y H I F F Q M S L W L P S E A T V Y L P      P:20


. . . . . .     G:5739
cctgtcccagtatctaaggttgtaagcacggatgaatatgttgcacgcacaaacatatat     C:60
P V P V S K V V S T D E Y V A R T N I Y      P:20


. . . . . .     G:5799
tatcatgcaggaacatccagactacttgcagttggacatccctattttcctattaaaaaa     C:60
Y H A G T S R L L A V G H P Y F P I K K      P:20


. . . . . .     G:5859
cctaacaataacaaaatattagttcctaaagtatcaggattacaatacagggtatttaga     C:60
P N N N K I L V P K V S G L Q Y R V F R      P:20


. . . . . .     G:5919
atacatttacctgaccccaataagtttggttttcctgacacctcattttataatccagat     C:60
I H L P D P N K F G F P D T S F Y N P D      P:20


. . . . . .     G:5979
acacagcggctggtttgggcctgtgtaggtgttgaggtaggtcgtggtcagccattaggt     C:60
T Q R L V W A C V G V E V G R G Q P L G      P:20


. . . . . .     G:6039
gtgggcattagtggccatcctttattaaataaattggatgacacagaaaatgctagtgct     C:60
V G I S G H P L L N K L D D T E N A S A      P:20


. . . . . .     G:6099
tatgcagcaaatgcaggtgtggataatagagaatgtatatctatggattacaaacaaaca     C:60
Y A A N A G V D N R E C I S M D Y K Q T      P:20


. . . . . .     G:6159
caattgtgtttaattggttgcaaaccacctataggggaacactggggcaaaggatcccca     C:60
Q L C L I G C K P P I G E H W G K G S P      P:20


. . . . . .     G:6219
tgtaccaatgttgcagtaaatccaggtgattgtccaccattagagttaataaacacagtt     C:60
C T N V A V N P G D C P P L E L I N T V      P:20


. . . . . .     G:6279
attcaggatggtgatatggttcatactggctttggtgctatggactttactacattacag     C:60
I Q D G D M V H T G F G A M D F T T L Q      P:20


. . . . . .     G:6339
gctaacaaaagtgaagttccactggatatttgtacatctatttgcaaatatccagattat     C:60
A N K S E V P L D I C T S I C K Y P D Y      P:20


. . . . . .     G:6399
attaaaatggtgtcagaaccatatggcgacagcttatttttttatttacgaagggaacaa     C:60
I K M V S E P Y G D S L F F Y L R R E Q      P:20


. . . . . .     G:6459
atgtttgttagacatttatttaatagggctggtactgttggtgaaaatgtaccagacgat     C:60
M F V R H L F N R A G T V G E N V P D D      P:20


. . . . . .     G:6519
ttatacattaaaggctctgggtctactgcaaatttagccagttcaaattattttcctaca     C:60
L Y I K G S G S T A N L A S S N Y F P T      P:20


. . . . . .     G:6579
cctagtggttctatggttacctctgatgcccaaatattcaataaaccttattggttacaa     C:60
P S G S M V T S D A Q I F N K P Y W L Q      P:20


. . . . . .     G:6639
cgagcacagggccacaataatggcatttgttggggtaaccaactatttgttactgttgtt     C:60
R A Q G H N N G I C W G N Q L F V T V V      P:20


. . . . . .     G:6699
gatactacacgcagtacaaatatgtcattatgtgctgccatatctacttcagaaactaca     C:60
D T T R S T N M S L C A A I S T S E T T      P:20


. . . . . .     G:6759
tataaaaatactaactttaaggagtacctacgacatggggaggaatatgatttacagttt     C:60
Y K N T N F K E Y L R H G E E Y D L Q F      P:20


. . . . . .     G:6819
atttttcaactgtgcaaaataaccttaactgcagacgttatgacatacatacattctatg     C:60
I F Q L C K I T L T A D V M T Y I H S M      P:20


. . . . . .     G:6879
aattccactattttggaggactggaattttggtctacaacctcccccaggaggcacacta     C:60
N S T I L E D W N F G L Q P P P G G T L      P:20


. . . . . .     G:6939
gaagatacttataggtttgtaacccaggcaattgcttgtcaaaaacatacacctccagca     C:60
E D T Y R F V T Q A I A C Q K H T P P A      P:20


. . . . . .     G:6999
cctaaagaagatgatccccttaaaaaatacactttttgggaagtaaatttaaaggaaaag     C:60
P K E D D P L K K Y T F W E V N L K E K      P:20


. . . . . .     G:7059
ttttctgcagacctagatcagtttcctttaggacgcaaatttttactacaagcaggattg     C:60
F S A D L D Q F P L G R K F L L Q A G L      P:20


. . . . . .     G:7119
aaggccaaaccaaaatttacattaggaaaacgaaaagctacacccaccacctcatctacc     C:60
K A K P K F T L G K R K A T P T T S S T      P:20


. . .      G:7155
tctacaactgctaaacgcaaaaaacgtaagctgtaa      C:36
S T T A K R K K R K L      P:11


Legend:gene mutationamino acid mutation

Structure&Mutation

5560
7155
Legend:HelixTurnBeta strandMutation
Feature keyPosition(s)Lengthgraphical view
Helix5629-56379
Beta strand5644-567330
Beta strand5683-570927
Beta strand5722-57309
Beta strand5737-57459
Beta strand5770-578718
Turn5797-58059
Turn5836-58449
Beta strand5845-588642
Beta strand5911-592818
Beta strand5932-594312
Beta strand5992-600918
Beta strand6016-604530
Beta strand6052-607221
Beta strand6085-60939
Beta strand6121-614121
Helix6187-619812
Helix6223-623412
Beta strand6244-625512
Helix6259-627618
Beta strand6298-632124
Beta strand6325-634824
Helix6376-63849
Turn6400-641112
Beta strand6430-644718
Turn6463-64719
Beta strand6478-649518
Beta strand6508-651912
Beta strand6523-65319
Helix6532-65409
Beta strand6547-656418
Beta strand6583-660321
Helix6628-66369
Beta strand6637-670569
Helix6712-674130
Helix6748-676215
Helix6799-683436
Turn6877-688812
Beta strand6898-690912
Helix6934-69429
Helix6946-697530