HPV59 L2
Accession: H001293
Uniprot: Q81970
Protein: L2
Organism: Human papillomavirus type 59
Function
Minor capsid protein. It is required for DNA packaging. It mediates several facets of viral entry including endosomal escape after uncoating.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | Late_protein_L2 | 4273-5595 | 1323 | Late Protein L2; | |
| CDD | PHA02777 | 4273-5238 | 966 | major capsid L1 protein; Provisional | |
| MOTIF_SCAN | 5392-5403 | 12 | |||
| MOTIF_SCAN | 4258-4269 | 12 | |||
| MOTIF_SCAN | 5095-5106 | 12 | |||
| MOTIF_SCAN | 4267-4278 | 12 | |||
| MOTIF_SCAN | 4345-4356 | 12 | |||
| MOTIF_SCAN | 4468-4479 | 12 | |||
| MOTIF_SCAN | 4543-4554 | 12 | |||
| MOTIF_SCAN | 4606-4617 | 12 | |||
| MOTIF_SCAN | 4723-4734 | 12 | |||
| MOTIF_SCAN | 4840-4851 | 12 | |||
| MOTIF_SCAN | 4936-4947 | 12 | |||
| MOTIF_SCAN | 5413-5424 | 12 | |||
| MOTIF_SCAN | 5437-5448 | 12 | |||
| MOTIF_SCAN | 4303-4320 | 18 | |||
| MOTIF_SCAN | 4339-4356 | 18 | |||
| MOTIF_SCAN | 4381-4398 | 18 | |||
| MOTIF_SCAN | 4402-4419 | 18 | |||
| MOTIF_SCAN | 4426-4443 | 18 | |||
| MOTIF_SCAN | 4453-4470 | 18 | |||
| MOTIF_SCAN | 5125-5142 | 18 | |||
| MOTIF_SCAN | 4237-4245 | 9 | |||
| MOTIF_SCAN | 4288-4296 | 9 | |||
| MOTIF_SCAN | 4876-4884 | 9 | |||
| MOTIF_SCAN | 5089-5097 | 9 | |||
| MOTIF_SCAN | 5104-5112 | 9 | |||
| MOTIF_SCAN | 5152-5160 | 9 | |||
| MOTIF_SCAN | 4381-4458 | 78 | |||
| MOTIF_SCAN | 4243-5595 | 1353 | |||
| MOTIF_SCAN | 4243-5595 | 1353 | |||
| INTERPROSCAN | 4252-5412 | 1161 | |||
| MOTIF_SEAR_IN_PROT | 4243-5595 | 1353 | |||
| MOTIF_SEAR_IN_PROT | 4252-5238 | 987 | |||
| MOTIF_SEAR_IN_PROT | 4480-4752 | 273 | |||
| MOTIF_SEAR_IN_PROT | 4798-4947 | 150 | |||
| MOTIF_SEAR_IN_PROT | 4447-4884 | 438 | |||
| MOTIF_SEAR_IN_PROT | 4252-5412 | 1161 | |||
| PROSITE_SCAN | 4237-4245 | 9 | |||
| PROSITE_SCAN | 4258-4269 | 12 | |||
| PROSITE_SCAN | 4267-4278 | 12 | |||
| PROSITE_SCAN | 4288-4296 | 9 | |||
| PROSITE_SCAN | 4303-4320 | 18 | |||
| PROSITE_SCAN | 4339-4356 | 18 | |||
| PROSITE_SCAN | 4345-4356 | 12 | |||
| PROSITE_SCAN | 4381-4398 | 18 | |||
| PROSITE_SCAN | 4402-4419 | 18 | |||
| PROSITE_SCAN | 4426-4443 | 18 | |||
| PROSITE_SCAN | 4453-4470 | 18 | |||
| PROSITE_SCAN | 4468-4479 | 12 | |||
| PROSITE_SCAN | 4543-4554 | 12 | |||
| PROSITE_SCAN | 4606-4617 | 12 | |||
| PROSITE_SCAN | 4723-4734 | 12 | |||
| PROSITE_SCAN | 4840-4851 | 12 | |||
| PROSITE_SCAN | 4876-4884 | 9 | |||
| PROSITE_SCAN | 4936-4947 | 12 | |||
| PROSITE_SCAN | 5089-5097 | 9 | |||
| PROSITE_SCAN | 5095-5106 | 12 | |||
| PROSITE_SCAN | 5104-5112 | 9 | |||
| PROSITE_SCAN | 5125-5142 | 18 | |||
| PROSITE_SCAN | 5152-5160 | 9 | |||
| PROSITE_SCAN | 5392-5403 | 12 | |||
| PROSITE_SCAN | 5413-5424 | 12 | |||
| PROSITE_SCAN | 5437-5448 | 12 | |||
| SBASE | 4273-5595 | 1323 | |||
| RADAR | 4846-5010 | 165 | |||
| RADAR | 5014-5223 | 210 | |||
| RADAR | 5227-5427 | 201 | |||
| RADAR | 4525-4620 | 96 | |||
| RADAR | 4636-4737 | 102 | |||
| RADAR | 4753-4845 | 93 | |||
| RADAR | 5428-5487 | 60 | |||
| RADAR | 5497-5559 | 63 | |||
| TMPRED_SERVER | 4396-4452 | 57 | |||
| TMPRED_SERVER | 4396-4458 | 63 | |||
| TMPRED_SERVER | 4573-4632 | 60 | |||
| TMPRED_SERVER | 4627-4689 | 63 | |||
| TMPRED_SERVER | 4693-4749 | 57 | |||
| TMPRED_SERVER | 5392-5448 | 57 | |||
| TMPRED_SERVER | 5398-5448 | 51 | |||
| TMPRED_SERVER | 5548-5607 | 60 |
Sequence
. . . . . . G:4290
atggtttcccatcgtgctgctcgtcgtaaacgtgcctcagcaacagacttatataaaact C:60
M V S H R A A R R K R A S A T D L Y K T P:20
. . . . . . G:4350
tgcaagcaggcaggtacatgcccttctgatgttattaataaagttgaaggtacaacttta C:60
C K Q A G T C P S D V I N K V E G T T L P:20
. . . . . . G:4410
gctgataaaatattgcagtggaccagcctaggaatatttttaggtggactaggtattggt C:60
A D K I L Q W T S L G I F L G G L G I G P:20
. . . . . . G:4470
actggatctggtaccggtggcagaacagggtacatacctttaggggggcgtacaaacact C:60
T G S G T G G R T G Y I P L G G R T N T P:20
. . . . . . G:4530
atagtagatgtatcgcctgctaaaccaccagtagttattgaacctgttggacctacagat C:60
I V D V S P A K P P V V I E P V G P T D P:20
. . . . . . G:4590
ccatctatagttacattagttgaggattctagtgttataacatctggagcccctgcccca C:60
P S I V T L V E D S S V I T S G A P A P P:20
. . . . . . G:4650
acatttacaggtacttcaggatttgaaatatctacctctagtacaacaacaccagctgtt C:60
T F T G T S G F E I S T S S T T T P A V P:20
. . . . . . G:4710
ttggatataaccccaacctcttctgttcaaattagtagctctagttttataaatcctgca C:60
L D I T P T S S V Q I S S S S F I N P A P:20
. . . . . . G:4770
tttacagacccttctgtcattgaggttccccaaacaggtgaaatttctggtaatatatta C:60
F T D P S V I E V P Q T G E I S G N I L P:20
. . . . . . G:4830
attagtacccctacctctggtgcacatggctatgaagaaattccaatgcaaacgtttgct C:60
I S T P T S G A H G Y E E I P M Q T F A P:20
. . . . . . G:4890
acggaaggtactggtttggaacccattagcagtacccccaatccaacagtacgtcgtgtg C:60
T E G T G L E P I S S T P N P T V R R V P:20
. . . . . . G:4950
gctggacctagattgtacagtagggctaatcaacaagttcgggtgtctaacgctgacttt C:60
A G P R L Y S R A N Q Q V R V S N A D F P:20
. . . . . . G:5010
ttaacacgtccatccacatttgttacatatgataaccctgcttatgatccaattgatact C:60
L T R P S T F V T Y D N P A Y D P I D T P:20
. . . . . . G:5070
acattaacttttgacccctcatcagaggttccagacccggactttatggatatagttcgt C:60
T L T F D P S S E V P D P D F M D I V R P:20
. . . . . . G:5130
ttgcataggcctgcattaacatccagacgcagcactgtaaggtttagtaggctaggacaa C:60
L H R P A L T S R R S T V R F S R L G Q P:20
. . . . . . G:5190
cgggcaaccatgtttacccgtagtggtaaacaaattggggcccgtgtacatttttatcat C:60
R A T M F T R S G K Q I G A R V H F Y H P:20
. . . . . . G:5250
gatataagccctataccacatgctgaagatattgaattgcaacctcttgtttcttcccag C:60
D I S P I P H A E D I E L Q P L V S S Q P:20
. . . . . . G:5310
gctgctactgatgatatatatgatatatatgcagatattacagatgaagcacctactagt C:60
A A T D D I Y D I Y A D I T D E A P T S P:20
. . . . . . G:5370
actgccaacactgcatttacaattcctaaatcttcttttcaaagtttgtcattaacacgg C:60
T A N T A F T I P K S S F Q S L S L T R P:20
. . . . . . G:5430
tcggcatctagcaccttttcaaatgtaactgttcctttggctactgcctgggatgttcct C:60
S A S S T F S N V T V P L A T A W D V P P:20
. . . . . . G:5490
gtaaatacaggacccgatatagttttacctaatactaatattgttgaacccacttattct C:60
V N T G P D I V L P N T N I V E P T Y S P:20
. . . . . . G:5550
actacaccctttaccaccatacagtctattaatatagaaggcacaaattattttttatgg C:60
T T P F T T I Q S I N I E G T N Y F L W P:20
. . . . . . G:5610
cctatatattattttttacctcgtaaacgtaaacgtgttccctatttttttacagatggc C:60
P I Y Y F L P R K R K R V P Y F F T D G P:20
. G:5625
tctatggcgttctag C:15
S M A F P:4
