HPV59 L1
Accession: H000507
Uniprot: Q81971
Protein: L1
Organism: Human papillomavirus type 59
Function
Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA02778 | 5606-7045 | 1440 | major capsid L1 protein; Provisional | |
| CDD | Late_protein_L1 | 5612-7051 | 1440 | L1 (late) protein; | |
| MOTIF_SCAN | 6998-7009 | 12 | |||
| MOTIF_SCAN | 6041-6052 | 12 | |||
| MOTIF_SCAN | 6251-6262 | 12 | |||
| MOTIF_SCAN | 6389-6400 | 12 | |||
| MOTIF_SCAN | 6626-6637 | 12 | |||
| MOTIF_SCAN | 6791-6802 | 12 | |||
| MOTIF_SCAN | 7109-7120 | 12 | |||
| MOTIF_SCAN | 5672-5683 | 12 | |||
| MOTIF_SCAN | 5870-5881 | 12 | |||
| MOTIF_SCAN | 6011-6022 | 12 | |||
| MOTIF_SCAN | 6182-6193 | 12 | |||
| MOTIF_SCAN | 6401-6412 | 12 | |||
| MOTIF_SCAN | 6599-6610 | 12 | |||
| MOTIF_SCAN | 6683-6694 | 12 | |||
| MOTIF_SCAN | 6797-6808 | 12 | |||
| MOTIF_SCAN | 6845-6856 | 12 | |||
| MOTIF_SCAN | 5855-5872 | 18 | |||
| MOTIF_SCAN | 5915-5932 | 18 | |||
| MOTIF_SCAN | 5933-5950 | 18 | |||
| MOTIF_SCAN | 6083-6100 | 18 | |||
| MOTIF_SCAN | 6494-6511 | 18 | |||
| MOTIF_SCAN | 6557-6574 | 18 | |||
| MOTIF_SCAN | 5720-5728 | 9 | |||
| MOTIF_SCAN | 5888-5896 | 9 | |||
| MOTIF_SCAN | 6611-6619 | 9 | |||
| MOTIF_SCAN | 6683-6691 | 9 | |||
| MOTIF_SCAN | 6857-6865 | 9 | |||
| MOTIF_SCAN | 7091-7099 | 9 | |||
| MOTIF_SCAN | 7118-7126 | 9 | |||
| MOTIF_SCAN | 5618-5641 | 24 | |||
| MOTIF_SCAN | 7058-7108 | 51 | |||
| MOTIF_SCAN | 7058-7111 | 54 | |||
| MOTIF_SCAN | 5606-7117 | 1512 | |||
| MOTIF_SCAN | 5606-7117 | 1512 | |||
| INTERPROSCAN | 5654-5716 | 63 | |||
| INTERPROSCAN | 5789-5857 | 69 | |||
| INTERPROSCAN | 5894-5971 | 78 | |||
| INTERPROSCAN | 6059-6112 | 54 | |||
| INTERPROSCAN | 6152-6223 | 72 | |||
| INTERPROSCAN | 6254-6316 | 63 | |||
| INTERPROSCAN | 6329-6400 | 72 | |||
| INTERPROSCAN | 6482-6550 | 69 | |||
| INTERPROSCAN | 6554-6619 | 66 | |||
| INTERPROSCAN | 6695-6748 | 54 | |||
| INTERPROSCAN | 6944-7015 | 72 | |||
| INTERPROSCAN | 5663-7027 | 1365 | |||
| INTERPROSCAN | 5657-7027 | 1371 | |||
| INTERPROSCAN | 5615-7102 | 1488 | |||
| MOTIF_SEAR_IN_PROT | 5606-7117 | 1512 | |||
| MOTIF_SEAR_IN_PROT | 5612-7111 | 1500 | |||
| MOTIF_SEAR_IN_PROT | 5711-5791 | 81 | |||
| MOTIF_SEAR_IN_PROT | 5615-7102 | 1488 | |||
| PROSITE_SCAN | 5618-5641 | 24 | |||
| PROSITE_SCAN | 5672-5683 | 12 | |||
| PROSITE_SCAN | 5720-5728 | 9 | |||
| PROSITE_SCAN | 5855-5872 | 18 | |||
| PROSITE_SCAN | 5870-5881 | 12 | |||
| PROSITE_SCAN | 5888-5896 | 9 | |||
| PROSITE_SCAN | 5915-5932 | 18 | |||
| PROSITE_SCAN | 5933-5950 | 18 | |||
| PROSITE_SCAN | 6011-6022 | 12 | |||
| PROSITE_SCAN | 6041-6052 | 12 | |||
| PROSITE_SCAN | 6083-6100 | 18 | |||
| PROSITE_SCAN | 6182-6193 | 12 | |||
| PROSITE_SCAN | 6251-6262 | 12 | |||
| PROSITE_SCAN | 6389-6400 | 12 | |||
| PROSITE_SCAN | 6401-6412 | 12 | |||
| PROSITE_SCAN | 6494-6511 | 18 | |||
| PROSITE_SCAN | 6557-6574 | 18 | |||
| PROSITE_SCAN | 6599-6610 | 12 | |||
| PROSITE_SCAN | 6611-6619 | 9 | |||
| PROSITE_SCAN | 6626-6637 | 12 | |||
| PROSITE_SCAN | 6683-6691 | 9 | |||
| PROSITE_SCAN | 6683-6694 | 12 | |||
| PROSITE_SCAN | 6791-6802 | 12 | |||
| PROSITE_SCAN | 6797-6808 | 12 | |||
| PROSITE_SCAN | 6845-6856 | 12 | |||
| PROSITE_SCAN | 6857-6865 | 9 | |||
| PROSITE_SCAN | 6998-7009 | 12 | |||
| PROSITE_SCAN | 7091-7099 | 9 | |||
| PROSITE_SCAN | 7109-7120 | 12 | |||
| PROSITE_SCAN | 7118-7126 | 9 | |||
| SBASE | 5606-7051 | 1446 | |||
| RADAR | 5630-5782 | 153 | |||
| RADAR | 5846-6004 | 159 | |||
| TMPRED_SERVER | 6659-6718 | 60 | |||
| TMPRED_SERVER | 6662-6718 | 57 | |||
| TMPRED_SERVER | 6758-6808 | 51 |
Sequence
. . . . . . G:5665
atggctctatggcgttctagtgacaacaaggtgtatctacctccaccttcggtagctaag C:60
M A L W R S S D N K V Y L P P P S V A K P:20
. . . . . . G:5725
gttgtcagcactgatgagtatgtcacccgtaccagtattttctaccacgcaggcagttcc C:60
V V S T D E Y V T R T S I F Y H A G S S P:20
. . . . . . G:5785
agacttcttacagttggacatccatattttaaagtacctaaaggtggtaatggtagacag C:60
R L L T V G H P Y F K V P K G G N G R Q P:20
. . . . . . G:5845
gatgttcctaaggtgtctgcatatcaatacagagtatttagggttaagttacctgatccc C:60
D V P K V S A Y Q Y R V F R V K L P D P P:20
. . . . . . G:5905
aataaatttggccttccagataacacagtatatgatcctaactctcaacgcttggtctgg C:60
N K F G L P D N T V Y D P N S Q R L V W P:20
. . . . . . G:5965
gcctgtgtaggtgttgaaatcggtcggggccaacctttaggggtaggactcagtggtcat C:60
A C V G V E I G R G Q P L G V G L S G H P:20
. . . . . . G:6025
ccattatataataaattggatgacactgaaaactctcatgtagcatctgctgttgatacc C:60
P L Y N K L D D T E N S H V A S A V D T P:20
. . . . . . G:6085
aaagatacacgtgataatgtatctgtggattataaacaaactcagctgtgtattattggc C:60
K D T R D N V S V D Y K Q T Q L C I I G P:20
. . . . . . G:6145
tgtgtacctgccattggagaacactggacaaagggcactgcttgtaagcctactactgtg C:60
C V P A I G E H W T K G T A C K P T T V P:20
. . . . . . G:6205
gttcagggcgattgtcctccactagaattaataaatacaccaattgaagatggtgatatg C:60
V Q G D C P P L E L I N T P I E D G D M P:20
. . . . . . G:6265
gtagacacaggatatggggctatggactttaaattgttgcaggataacaaaagtgaagta C:60
V D T G Y G A M D F K L L Q D N K S E V P:20
. . . . . . G:6325
ccattggatatttgtcagtctatttgtaaatatcctgattatttacaaatgtcagcagat C:60
P L D I C Q S I C K Y P D Y L Q M S A D P:20
. . . . . . G:6385
gcttatggagacagtatgtttttttgtttaaggcgagaacaggtttttgccagacatttt C:60
A Y G D S M F F C L R R E Q V F A R H F P:20
. . . . . . G:6445
tggaatagatctggtactatgggtgatcaacttcctgaatcactatatattaaaggtact C:60
W N R S G T M G D Q L P E S L Y I K G T P:20
. . . . . . G:6505
gacatacgtgccaacccaggcagttatttatattccccttccccaagtgggtctgtggtt C:60
D I R A N P G S Y L Y S P S P S G S V V P:20
. . . . . . G:6565
acttctgattcacaattatttaataaaccatattggctgcacaaggctcagggtttaaac C:60
T S D S Q L F N K P Y W L H K A Q G L N P:20
. . . . . . G:6625
aatggtatatgttggcacaatcaattgtttttaacagttgtagatactactcgcagcacc C:60
N G I C W H N Q L F L T V V D T T R S T P:20
. . . . . . G:6685
aatctttctgtgtgtgcttctactacttcttctattcctaatgtatacacacctaccagt C:60
N L S V C A S T T S S I P N V Y T P T S P:20
. . . . . . G:6745
tttaaagaatatgccagacatgtggaggaatttgatttgcagtttatatttcaactgtgt C:60
F K E Y A R H V E E F D L Q F I F Q L C P:20
. . . . . . G:6805
aaaataacattaactacagaggtaatgtcatacattcataatatgaataccactattttg C:60
K I T L T T E V M S Y I H N M N T T I L P:20
. . . . . . G:6865
gaggattggaattttggtgttacaccacctcctactgctagtttagttgacacataccgt C:60
E D W N F G V T P P P T A S L V D T Y R P:20
. . . . . . G:6925
tttgttcaatctgctgctgtaacttgtcaaaaggacaccgcaccgccagttaaacaggac C:60
F V Q S A A V T C Q K D T A P P V K Q D P:20
. . . . . . G:6985
ccttatgacaaactaaagttttggcctgtagatcttaaggaaaggttttctgcagatctt C:60
P Y D K L K F W P V D L K E R F S A D L P:20
. . . . . . G:7045
gatcagtttcctttgggacgtaaatttttattgcaattaggagctagacctaagcccact C:60
D Q F P L G R K F L L Q L G A R P K P T P:20
. . . . . . G:7105
ataggcccacgcaaacgtgcagcgcctgcccctacctctaccccatcaccaaaacgtgtt C:60
I G P R K R A A P A P T S T P S P K R V P:20
. . G:7132
aagcgtcgcaagtcttccagaaaatag C:27
K R R K S S R K P:8
