HPV18 L1
Accession: H000198
NC: AY262282.1
Uniprot: Q80B70
Protein: L1
Organism: Human papillomavirus type 18
Function
Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | Late_protein_L1 | 5619-7061 | 1443 | L1 (late) protein; | ![]() |
| CDD | PHA02778 | 5613-7052 | 1440 | major capsid L1 protein; Provisional | ![]() |
| MOTIF_SCAN | 7005-7016 | 12 | ![]() | ||
| MOTIF_SCAN | 6024-6035 | 12 | ![]() | ||
| MOTIF_SCAN | 6048-6059 | 12 | ![]() | ||
| MOTIF_SCAN | 6633-6644 | 12 | ![]() | ||
| MOTIF_SCAN | 6798-6809 | 12 | ![]() | ||
| MOTIF_SCAN | 7041-7052 | 12 | ![]() | ||
| MOTIF_SCAN | 7062-7073 | 12 | ![]() | ||
| MOTIF_SCAN | 6153-6164 | 12 | ![]() | ||
| MOTIF_SCAN | 6189-6200 | 12 | ![]() | ||
| MOTIF_SCAN | 6246-6257 | 12 | ![]() | ||
| MOTIF_SCAN | 6258-6269 | 12 | ![]() | ||
| MOTIF_SCAN | 6408-6419 | 12 | ![]() | ||
| MOTIF_SCAN | 6606-6617 | 12 | ![]() | ||
| MOTIF_SCAN | 6804-6815 | 12 | ![]() | ||
| MOTIF_SCAN | 6852-6863 | 12 | ![]() | ||
| MOTIF_SCAN | 5862-5879 | 18 | ![]() | ||
| MOTIF_SCAN | 5922-5939 | 18 | ![]() | ||
| MOTIF_SCAN | 5940-5957 | 18 | ![]() | ||
| MOTIF_SCAN | 6090-6107 | 18 | ![]() | ||
| MOTIF_SCAN | 6501-6518 | 18 | ![]() | ||
| MOTIF_SCAN | 6672-6689 | 18 | ![]() | ||
| MOTIF_SCAN | 5727-5735 | 9 | ![]() | ||
| MOTIF_SCAN | 5895-5903 | 9 | ![]() | ||
| MOTIF_SCAN | 6618-6626 | 9 | ![]() | ||
| MOTIF_SCAN | 6864-6872 | 9 | ![]() | ||
| MOTIF_SCAN | 7092-7100 | 9 | ![]() | ||
| MOTIF_SCAN | 5625-5648 | 24 | ![]() | ||
| MOTIF_SCAN | 6975-7001 | 27 | ![]() | ||
| MOTIF_SCAN | 7065-7112 | 48 | ![]() | ||
| MOTIF_SCAN | 7062-7115 | 54 | ![]() | ||
| MOTIF_SCAN | 5613-7118 | 1506 | ![]() | ||
| MOTIF_SCAN | 5613-7118 | 1506 | ![]() | ||
| INTERPROSCAN | 5622-7112 | 1491 | ![]() | ||
| INTERPROSCAN | 5670-7037 | 1368 | ![]() | ||
| INTERPROSCAN | 5664-7034 | 1371 | ![]() | ||
| INTERPROSCAN | 5661-5723 | 63 | ![]() | ||
| INTERPROSCAN | 5796-5864 | 69 | ![]() | ||
| INTERPROSCAN | 5901-5978 | 78 | ![]() | ||
| INTERPROSCAN | 6066-6119 | 54 | ![]() | ||
| INTERPROSCAN | 6159-6230 | 72 | ![]() | ||
| INTERPROSCAN | 6261-6323 | 63 | ![]() | ||
| INTERPROSCAN | 6336-6407 | 72 | ![]() | ||
| INTERPROSCAN | 6489-6557 | 69 | ![]() | ||
| INTERPROSCAN | 6561-6626 | 66 | ![]() | ||
| INTERPROSCAN | 6702-6755 | 54 | ![]() | ||
| INTERPROSCAN | 6951-7022 | 72 | ![]() | ||
| MOTIF_SEAR_IN_PROT | 5619-7118 | 1500 | ![]() | ||
| MOTIF_SEAR_IN_PROT | 5613-7124 | 1512 | ![]() | ||
| MOTIF_SEAR_IN_PROT | 5622-7112 | 1491 | ![]() | ||
| PROSITE_SCAN | 5625-5648 | 24 | ![]() | ||
| PROSITE_SCAN | 5727-5735 | 9 | ![]() | ||
| PROSITE_SCAN | 5862-5879 | 18 | ![]() | ||
| PROSITE_SCAN | 5895-5903 | 9 | ![]() | ||
| PROSITE_SCAN | 5922-5939 | 18 | ![]() | ||
| PROSITE_SCAN | 5940-5957 | 18 | ![]() | ||
| PROSITE_SCAN | 6024-6035 | 12 | ![]() | ||
| PROSITE_SCAN | 6048-6059 | 12 | ![]() | ||
| PROSITE_SCAN | 6090-6107 | 18 | ![]() | ||
| PROSITE_SCAN | 6153-6164 | 12 | ![]() | ||
| PROSITE_SCAN | 6189-6200 | 12 | ![]() | ||
| PROSITE_SCAN | 6246-6257 | 12 | ![]() | ||
| PROSITE_SCAN | 6258-6269 | 12 | ![]() | ||
| PROSITE_SCAN | 6408-6419 | 12 | ![]() | ||
| PROSITE_SCAN | 6501-6518 | 18 | ![]() | ||
| PROSITE_SCAN | 6606-6617 | 12 | ![]() | ||
| PROSITE_SCAN | 6618-6626 | 9 | ![]() | ||
| PROSITE_SCAN | 6633-6644 | 12 | ![]() | ||
| PROSITE_SCAN | 6672-6689 | 18 | ![]() | ||
| PROSITE_SCAN | 6798-6809 | 12 | ![]() | ||
| PROSITE_SCAN | 6804-6815 | 12 | ![]() | ||
| PROSITE_SCAN | 6852-6863 | 12 | ![]() | ||
| PROSITE_SCAN | 6864-6872 | 9 | ![]() | ||
| PROSITE_SCAN | 6975-7001 | 27 | ![]() | ||
| PROSITE_SCAN | 7005-7016 | 12 | ![]() | ||
| PROSITE_SCAN | 7041-7052 | 12 | ![]() | ||
| PROSITE_SCAN | 7062-7073 | 12 | ![]() | ||
| PROSITE_SCAN | 7092-7100 | 9 | ![]() | ||
| SBASE | 5613-7061 | 1449 | ![]() | ||
| RADAR | 5739-5798 | 60 | ![]() | ||
| RADAR | 5838-5894 | 57 | ![]() | ||
| TMPRED_SERVER | 5436-5489 | 54 | ![]() | ||
| TMPRED_SERVER | 5439-5498 | 60 | ![]() | ||
| TMPRED_SERVER | 5523-5573 | 51 | ![]() | ||
| TMPRED_SERVER | 5523-5576 | 54 | ![]() | ||
| TMPRED_SERVER | 5553-5612 | 60 | ![]() | ||
| TMPRED_SERVER | 6732-6782 | 51 | ![]() | ||
| TMPRED_SERVER | 6738-6791 | 54 | ![]() |
Sequence
. . . . . . G:5489
atgtgcctgtatacacgggtcctgatattacattaccatctactacctctgtatggccca C:60
M C L Y T R V L I L H Y H L L P L Y G P P:20
. . . . . . G:5549
ttgtatcacccacggcccctgcctctacacagtatattggtatacatggtacacattatt C:60
L Y H P R P L P L H S I L V Y M V H I I P:20
. . . . . . G:5609
atttgtggccattatattattttattcctaagaaacgtaaacgtgttccctatttttttg C:60
I C G H Y I I L F L R N V N V F P I F L P:20
. . . . . . G:5669
cagatggctttgtggcggcctagtgacaataccgtatatcttccacctccttctgtggca C:60
Q M A L W R P S D N T V Y L P P P S V A P:20
. . . . . . G:5729
agagttgtaaataccgatgattatgtgactcgcacaagcatattttatcatgctggcagc C:60
R V V N T D D Y V T R T S I F Y H A G S P:20
. . . . . . G:5789
tctagattattaactgttggtaatccatattttagggttcctgcaggtggtggcaataag C:60
S R L L T V G N P Y F R V P A G G G N K P:20
. . . . . . G:5849
caggatattcctaaggtttctgcataccaatatagagtatttagggtgcagttacctgac C:60
Q D I P K V S A Y Q Y R V F R V Q L P D P:20
. . . . . . G:5909
ccaaataaatttggtttacctgatactagtatttataatcctgaaacacaacgtttagtg C:60
P N K F G L P D T S I Y N P E T Q R L V P:20
. . . . . . G:5969
tgggcctgtgctggagtggaaattggccgtggtcagcctttaggtgttggccttagtggg C:60
W A C A G V E I G R G Q P L G V G L S G P:20
. . . . . . G:6029
catccattttataataaattagatgacactgaaagttcccatgccgccacgtctaatgtt C:60
H P F Y N K L D D T E S S H A A T S N V P:20
. . . . . . G:6089
tctgaggacgttagggacaatgtgtctgtagattataagcagacacagttatgtattttg C:60
S E D V R D N V S V D Y K Q T Q L C I L P:20
. . . . . . G:6149
ggctgtgcccctgctattggggaacactgggctaaaggcactgcttgtaaatcgcgtcct C:60
G C A P A I G E H W A K G T A C K S R P P:20
. . . . . . G:6209
ttatcacagggcgattgcccccctttagaacttaaaaacacagttttggaagatggtgat C:60
L S Q G D C P P L E L K N T V L E D G D P:20
. . . . . . G:6269
atggtagatactggatatggtgccatggactttagtacattgcaagatactaaatgtgag C:60
M V D T G Y G A M D F S T L Q D T K C E P:20
. . . . . . G:6329
gtaccattggatatttgtcagtctatttgtaaatatcctgattatttacaaatgtctgca C:60
V P L D I C Q S I C K Y P D Y L Q M S A P:20
. . . . . . G:6389
gatccttatggggattccatgtttttttgcttacggcgtgagcagctttttgctaggcat C:60
D P Y G D S M F F C L R R E Q L F A R H P:20
. . . . . . G:6449
ttttggaatagagcaggtactatgggtgacactgtgcctcaatccttatatattaaaggc C:60
F W N R A G T M G D T V P Q S L Y I K G P:20
. . . . . . G:6509
acaggtatgcgtgcttcacctggcagctgtgtgtattctccctctccaagtggctctatt C:60
T G M R A S P G S C V Y S P S P S G S I P:20
. . . . . . G:6569
gttacctctgactcccagttgtttaataaaccatattggttacataaggcacagggtcat C:60
V T S D S Q L F N K P Y W L H K A Q G H P:20
. . . . . . G:6629
aacaatggtgtttgctggcataatcaattatttgttactgtggtagataccactcgcagt C:60
N N G V C W H N Q L F V T V V D T T R S P:20
. . . . . . G:6689
accaatttaacaatatgtgcttctacacagtctcctgtacctgggcaatatgatgctacc C:60
T N L T I C A S T Q S P V P G Q Y D A T P:20
. . . . . . G:6749
aaatttaagcagtatagcagacatgttgaggaatatgatttgcagtttatttttcagttg C:60
K F K Q Y S R H V E E Y D L Q F I F Q L P:20
. . . . . . G:6809
tgtactattactttaactgcagatgttatgtcctatattcatagtatgaatagcagtatt C:60
C T I T L T A D V M S Y I H S M N S S I P:20
. . . . . . G:6869
ttagaggattggaactttggtgttccccccccgccaactactagtttggtggatacatat C:60
L E D W N F G V P P P P T T S L V D T Y P:20
. . . . . . G:6929
cgttttgtacaatctgttgctattacctgtcaaaaggatgctgcaccggctgaaaataag C:60
R F V Q S V A I T C Q K D A A P A E N K P:20
. . . . . . G:6989
gatccctatgataagttaaagttttggaatgtggatttaaaggaaaagttttctttagac C:60
D P Y D K L K F W N V D L K E K F S L D P:20
. . . . . . G:7049
ttagatcaatatccccttggacgtaaatttttggttcaggctggattgcgtcgcaagccc C:60
L D Q Y P L G R K F L V Q A G L R R K P P:20
. . . . . . G:7109
accataggccctcgcaaacgttctgctccatctgccactacgtcttctaaacctgccaag C:60
T I G P R K R S A P S A T T S S K P A K P:20
. . G:7136
cgtgtgcgtgtacgtgccaggaagtaa C:27
R V R V R A R K P:8
Structure&Mutation
5430
7136

Legend:HelixTurnBeta strand
Mutation
Mutation| Feature key | Position(s) | Length | graphical view |
|---|---|---|---|
| Helix | 5682-5690 | 9 | |
| Beta strand | 5697-5726 | 30 | |
| Beta strand | 5736-5762 | 27 | |
| Beta strand | 5823-5840 | 18 | |
| Beta strand | 5850-5861 | 12 | |
| Turn | 5889-5897 | 9 | |
| Beta strand | 5898-5939 | 42 | |
| Beta strand | 5964-5981 | 18 | |
| Turn | 5997-6005 | 9 | |
| Beta strand | 6045-6059 | 15 | |
| Beta strand | 6069-6098 | 30 | |
| Beta strand | 6105-6125 | 21 | |
| Beta strand | 6138-6146 | 9 | |
| Beta strand | 6174-6194 | 21 | |
| Beta strand | 6231-6239 | 9 | |
| Helix | 6240-6251 | 12 | |
| Beta strand | 6252-6263 | 12 | |
| Turn | 6276-6290 | 15 | |
| Beta strand | 6291-6308 | 18 | |
| Helix | 6312-6329 | 18 | |
| Beta strand | 6357-6377 | 21 | |
| Beta strand | 6387-6398 | 12 | |
| Beta strand | 6405-6419 | 15 | |
| Helix | 6429-6437 | 9 | |
| Helix | 6453-6461 | 9 | |
| Beta strand | 6483-6494 | 12 | |
| Helix | 6516-6524 | 9 | |
| Beta strand | 6531-6539 | 9 | |
| Beta strand | 6561-6572 | 12 | |
| Beta strand | 6576-6584 | 9 | |
| Helix | 6585-6593 | 9 | |
| Beta strand | 6600-6617 | 18 | |
| Beta strand | 6636-6665 | 30 | |
| Helix | 6684-6692 | 9 | |
| Beta strand | 6693-6761 | 69 | |
| Helix | 6768-6797 | 30 | |
| Helix | 6804-6815 | 12 | |
| Turn | 6933-6944 | 12 | |
| Beta strand | 6954-6965 | 12 | |
| Helix | 6990-6998 | 9 | |
| Helix | 7002-7031 | 30 |

