HPV18 L1

Accession: H000198
NC: AY262282.1
Uniprot: Q80B70
Protein: L1
Organism: Human papillomavirus type 18

Function

Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.

Domain&Motif

method domain/motif name position length description graphical view
CDDLate_protein_L15619-70611443L1 (late) protein;
CDDPHA027785613-70521440major capsid L1 protein; Provisional
MOTIF_SCAN7005-701612
MOTIF_SCAN6024-603512
MOTIF_SCAN6048-605912
MOTIF_SCAN6633-664412
MOTIF_SCAN6798-680912
MOTIF_SCAN7041-705212
MOTIF_SCAN7062-707312
MOTIF_SCAN6153-616412
MOTIF_SCAN6189-620012
MOTIF_SCAN6246-625712
MOTIF_SCAN6258-626912
MOTIF_SCAN6408-641912
MOTIF_SCAN6606-661712
MOTIF_SCAN6804-681512
MOTIF_SCAN6852-686312
MOTIF_SCAN5862-587918
MOTIF_SCAN5922-593918
MOTIF_SCAN5940-595718
MOTIF_SCAN6090-610718
MOTIF_SCAN6501-651818
MOTIF_SCAN6672-668918
MOTIF_SCAN5727-57359
MOTIF_SCAN5895-59039
MOTIF_SCAN6618-66269
MOTIF_SCAN6864-68729
MOTIF_SCAN7092-71009
MOTIF_SCAN5625-564824
MOTIF_SCAN6975-700127
MOTIF_SCAN7065-711248
MOTIF_SCAN7062-711554
MOTIF_SCAN5613-71181506
MOTIF_SCAN5613-71181506
INTERPROSCAN5622-71121491
INTERPROSCAN5670-70371368
INTERPROSCAN5664-70341371
INTERPROSCAN5661-572363
INTERPROSCAN5796-586469
INTERPROSCAN5901-597878
INTERPROSCAN6066-611954
INTERPROSCAN6159-623072
INTERPROSCAN6261-632363
INTERPROSCAN6336-640772
INTERPROSCAN6489-655769
INTERPROSCAN6561-662666
INTERPROSCAN6702-675554
INTERPROSCAN6951-702272
MOTIF_SEAR_IN_PROT5619-71181500
MOTIF_SEAR_IN_PROT5613-71241512
MOTIF_SEAR_IN_PROT5622-71121491
PROSITE_SCAN5625-564824
PROSITE_SCAN5727-57359
PROSITE_SCAN5862-587918
PROSITE_SCAN5895-59039
PROSITE_SCAN5922-593918
PROSITE_SCAN5940-595718
PROSITE_SCAN6024-603512
PROSITE_SCAN6048-605912
PROSITE_SCAN6090-610718
PROSITE_SCAN6153-616412
PROSITE_SCAN6189-620012
PROSITE_SCAN6246-625712
PROSITE_SCAN6258-626912
PROSITE_SCAN6408-641912
PROSITE_SCAN6501-651818
PROSITE_SCAN6606-661712
PROSITE_SCAN6618-66269
PROSITE_SCAN6633-664412
PROSITE_SCAN6672-668918
PROSITE_SCAN6798-680912
PROSITE_SCAN6804-681512
PROSITE_SCAN6852-686312
PROSITE_SCAN6864-68729
PROSITE_SCAN6975-700127
PROSITE_SCAN7005-701612
PROSITE_SCAN7041-705212
PROSITE_SCAN7062-707312
PROSITE_SCAN7092-71009
SBASE5613-70611449
RADAR5739-579860
RADAR5838-589457
TMPRED_SERVER5436-548954
TMPRED_SERVER5439-549860
TMPRED_SERVER5523-557351
TMPRED_SERVER5523-557654
TMPRED_SERVER5553-561260
TMPRED_SERVER6732-678251
TMPRED_SERVER6738-679154

Sequence

         .         .         .         .         .         .     G:5489
atgtgcctgtatacacgggtcctgatattacattaccatctactacctctgtatggccca     C:60
M C L Y T R V L I L H Y H L L P L Y G P      P:20


. . . . . .     G:5549
ttgtatcacccacggcccctgcctctacacagtatattggtatacatggtacacattatt     C:60
L Y H P R P L P L H S I L V Y M V H I I      P:20


. . . . . .     G:5609
atttgtggccattatattattttattcctaagaaacgtaaacgtgttccctatttttttg     C:60
I C G H Y I I L F L R N V N V F P I F L      P:20


. . . . . .     G:5669
cagatggctttgtggcggcctagtgacaataccgtatatcttccacctccttctgtggca     C:60
Q M A L W R P S D N T V Y L P P P S V A      P:20


. . . . . .     G:5729
agagttgtaaataccgatgattatgtgactcgcacaagcatattttatcatgctggcagc     C:60
R V V N T D D Y V T R T S I F Y H A G S      P:20


. . . . . .     G:5789
tctagattattaactgttggtaatccatattttagggttcctgcaggtggtggcaataag     C:60
S R L L T V G N P Y F R V P A G G G N K      P:20


. . . . . .     G:5849
caggatattcctaaggtttctgcataccaatatagagtatttagggtgcagttacctgac     C:60
Q D I P K V S A Y Q Y R V F R V Q L P D      P:20


. . . . . .     G:5909
ccaaataaatttggtttacctgatactagtatttataatcctgaaacacaacgtttagtg     C:60
P N K F G L P D T S I Y N P E T Q R L V      P:20


. . . . . .     G:5969
tgggcctgtgctggagtggaaattggccgtggtcagcctttaggtgttggccttagtggg     C:60
W A C A G V E I G R G Q P L G V G L S G      P:20


. . . . . .     G:6029
catccattttataataaattagatgacactgaaagttcccatgccgccacgtctaatgtt     C:60
H P F Y N K L D D T E S S H A A T S N V      P:20


. . . . . .     G:6089
tctgaggacgttagggacaatgtgtctgtagattataagcagacacagttatgtattttg     C:60
S E D V R D N V S V D Y K Q T Q L C I L      P:20


. . . . . .     G:6149
ggctgtgcccctgctattggggaacactgggctaaaggcactgcttgtaaatcgcgtcct     C:60
G C A P A I G E H W A K G T A C K S R P      P:20


. . . . . .     G:6209
ttatcacagggcgattgcccccctttagaacttaaaaacacagttttggaagatggtgat     C:60
L S Q G D C P P L E L K N T V L E D G D      P:20


. . . . . .     G:6269
atggtagatactggatatggtgccatggactttagtacattgcaagatactaaatgtgag     C:60
M V D T G Y G A M D F S T L Q D T K C E      P:20


. . . . . .     G:6329
gtaccattggatatttgtcagtctatttgtaaatatcctgattatttacaaatgtctgca     C:60
V P L D I C Q S I C K Y P D Y L Q M S A      P:20


. . . . . .     G:6389
gatccttatggggattccatgtttttttgcttacggcgtgagcagctttttgctaggcat     C:60
D P Y G D S M F F C L R R E Q L F A R H      P:20


. . . . . .     G:6449
ttttggaatagagcaggtactatgggtgacactgtgcctcaatccttatatattaaaggc     C:60
F W N R A G T M G D T V P Q S L Y I K G      P:20


. . . . . .     G:6509
acaggtatgcgtgcttcacctggcagctgtgtgtattctccctctccaagtggctctatt     C:60
T G M R A S P G S C V Y S P S P S G S I      P:20


. . . . . .     G:6569
gttacctctgactcccagttgtttaataaaccatattggttacataaggcacagggtcat     C:60
V T S D S Q L F N K P Y W L H K A Q G H      P:20


. . . . . .     G:6629
aacaatggtgtttgctggcataatcaattatttgttactgtggtagataccactcgcagt     C:60
N N G V C W H N Q L F V T V V D T T R S      P:20


. . . . . .     G:6689
accaatttaacaatatgtgcttctacacagtctcctgtacctgggcaatatgatgctacc     C:60
T N L T I C A S T Q S P V P G Q Y D A T      P:20


. . . . . .     G:6749
aaatttaagcagtatagcagacatgttgaggaatatgatttgcagtttatttttcagttg     C:60
K F K Q Y S R H V E E Y D L Q F I F Q L      P:20


. . . . . .     G:6809
tgtactattactttaactgcagatgttatgtcctatattcatagtatgaatagcagtatt     C:60
C T I T L T A D V M S Y I H S M N S S I      P:20


. . . . . .     G:6869
ttagaggattggaactttggtgttccccccccgccaactactagtttggtggatacatat     C:60
L E D W N F G V P P P P T T S L V D T Y      P:20


. . . . . .     G:6929
cgttttgtacaatctgttgctattacctgtcaaaaggatgctgcaccggctgaaaataag     C:60
R F V Q S V A I T C Q K D A A P A E N K      P:20


. . . . . .     G:6989
gatccctatgataagttaaagttttggaatgtggatttaaaggaaaagttttctttagac     C:60
D P Y D K L K F W N V D L K E K F S L D      P:20


. . . . . .     G:7049
ttagatcaatatccccttggacgtaaatttttggttcaggctggattgcgtcgcaagccc     C:60
L D Q Y P L G R K F L V Q A G L R R K P      P:20


. . . . . .     G:7109
accataggccctcgcaaacgttctgctccatctgccactacgtcttctaaacctgccaag     C:60
T I G P R K R S A P S A T T S S K P A K      P:20


. .      G:7136
cgtgtgcgtgtacgtgccaggaagtaa      C:27
R V R V R A R K      P:8


Structure&Mutation

5430
7136
Legend:HelixTurnBeta strandMutation
Feature keyPosition(s)Lengthgraphical view
Helix5682-56909
Beta strand5697-572630
Beta strand5736-576227
Beta strand5823-584018
Beta strand5850-586112
Turn5889-58979
Beta strand5898-593942
Beta strand5964-598118
Turn5997-60059
Beta strand6045-605915
Beta strand6069-609830
Beta strand6105-612521
Beta strand6138-61469
Beta strand6174-619421
Beta strand6231-62399
Helix6240-625112
Beta strand6252-626312
Turn6276-629015
Beta strand6291-630818
Helix6312-632918
Beta strand6357-637721
Beta strand6387-639812
Beta strand6405-641915
Helix6429-64379
Helix6453-64619
Beta strand6483-649412
Helix6516-65249
Beta strand6531-65399
Beta strand6561-657212
Beta strand6576-65849
Helix6585-65939
Beta strand6600-661718
Beta strand6636-666530
Helix6684-66929
Beta strand6693-676169
Helix6768-679730
Helix6804-681512
Turn6933-694412
Beta strand6954-696512
Helix6990-69989
Helix7002-703130