HPV52 L2
Accession: H000153
Uniprot: P36763
Protein: L2
Organism: Human papillomavirus type 52
Function
Minor capsid protein. It is required for DNA packaging. It mediates several facets of viral entry including endosomal escape after uncoating.
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | Late_protein_L2 | 4274-5605 | 1332 | Late Protein L2; | |
| CDD | PHA02777 | 4283-5593 | 1311 | major capsid L1 protein; Provisional | |
| MOTIF_SCAN | 4688-4699 | 12 | |||
| MOTIF_SCAN | 5405-5416 | 12 | |||
| MOTIF_SCAN | 4271-4282 | 12 | |||
| MOTIF_SCAN | 4289-4300 | 12 | |||
| MOTIF_SCAN | 5144-5155 | 12 | |||
| MOTIF_SCAN | 4376-4387 | 12 | |||
| MOTIF_SCAN | 4577-4588 | 12 | |||
| MOTIF_SCAN | 4595-4606 | 12 | |||
| MOTIF_SCAN | 4640-4651 | 12 | |||
| MOTIF_SCAN | 4697-4708 | 12 | |||
| MOTIF_SCAN | 4745-4756 | 12 | |||
| MOTIF_SCAN | 4835-4846 | 12 | |||
| MOTIF_SCAN | 4868-4879 | 12 | |||
| MOTIF_SCAN | 5321-5332 | 12 | |||
| MOTIF_SCAN | 5432-5443 | 12 | |||
| MOTIF_SCAN | 5474-5485 | 12 | |||
| MOTIF_SCAN | 4370-4387 | 18 | |||
| MOTIF_SCAN | 4412-4429 | 18 | |||
| MOTIF_SCAN | 4433-4450 | 18 | |||
| MOTIF_SCAN | 4457-4474 | 18 | |||
| MOTIF_SCAN | 4913-4930 | 18 | |||
| MOTIF_SCAN | 5174-5191 | 18 | |||
| MOTIF_SCAN | 4277-4285 | 9 | |||
| MOTIF_SCAN | 4319-4327 | 9 | |||
| MOTIF_SCAN | 4484-4492 | 9 | |||
| MOTIF_SCAN | 4520-4528 | 9 | |||
| MOTIF_SCAN | 4925-4933 | 9 | |||
| MOTIF_SCAN | 5138-5146 | 9 | |||
| MOTIF_SCAN | 5153-5161 | 9 | |||
| MOTIF_SCAN | 5186-5194 | 9 | |||
| MOTIF_SCAN | 5201-5209 | 9 | |||
| MOTIF_SCAN | 4403-4471 | 69 | |||
| MOTIF_SCAN | 4262-4297 | 36 | |||
| MOTIF_SCAN | 4274-5632 | 1359 | |||
| MOTIF_SCAN | 4274-5632 | 1359 | |||
| INTERPROSCAN | 4283-5623 | 1341 | |||
| MOTIF_SEAR_IN_PROT | 4274-5632 | 1359 | |||
| MOTIF_SEAR_IN_PROT | 4283-5623 | 1341 | |||
| MOTIF_SEAR_IN_PROT | 4283-5623 | 1341 | |||
| PROSITE_SCAN | 4271-4282 | 12 | |||
| PROSITE_SCAN | 4277-4285 | 9 | |||
| PROSITE_SCAN | 4289-4300 | 12 | |||
| PROSITE_SCAN | 4319-4327 | 9 | |||
| PROSITE_SCAN | 4370-4387 | 18 | |||
| PROSITE_SCAN | 4376-4387 | 12 | |||
| PROSITE_SCAN | 4412-4429 | 18 | |||
| PROSITE_SCAN | 4433-4450 | 18 | |||
| PROSITE_SCAN | 4457-4474 | 18 | |||
| PROSITE_SCAN | 4484-4492 | 9 | |||
| PROSITE_SCAN | 4520-4528 | 9 | |||
| PROSITE_SCAN | 4577-4588 | 12 | |||
| PROSITE_SCAN | 4595-4606 | 12 | |||
| PROSITE_SCAN | 4640-4651 | 12 | |||
| PROSITE_SCAN | 4688-4699 | 12 | |||
| PROSITE_SCAN | 4697-4708 | 12 | |||
| PROSITE_SCAN | 4745-4756 | 12 | |||
| PROSITE_SCAN | 4835-4846 | 12 | |||
| PROSITE_SCAN | 4868-4879 | 12 | |||
| PROSITE_SCAN | 4913-4930 | 18 | |||
| PROSITE_SCAN | 4925-4933 | 9 | |||
| PROSITE_SCAN | 5138-5146 | 9 | |||
| PROSITE_SCAN | 5144-5155 | 12 | |||
| PROSITE_SCAN | 5153-5161 | 9 | |||
| PROSITE_SCAN | 5174-5191 | 18 | |||
| PROSITE_SCAN | 5186-5194 | 9 | |||
| PROSITE_SCAN | 5201-5209 | 9 | |||
| PROSITE_SCAN | 5321-5332 | 12 | |||
| PROSITE_SCAN | 5405-5416 | 12 | |||
| PROSITE_SCAN | 5432-5443 | 12 | |||
| PROSITE_SCAN | 5474-5485 | 12 | |||
| SBASE | 4274-5632 | 1359 | |||
| RADAR | 4472-4714 | 243 | |||
| RADAR | 4715-4888 | 174 | |||
| RADAR | 4889-4996 | 108 | |||
| RADAR | 5384-5572 | 189 | |||
| TMPRED_SERVER | 4406-4462 | 57 | |||
| TMPRED_SERVER | 4406-4465 | 60 | |||
| TMPRED_SERVER | 5528-5587 | 60 | |||
| TMPRED_SERVER | 5549-5608 | 60 | |||
| UNIPROTKB | 5600-5626 | 27 |
Sequence
. . . . . . G:4321
atgagatacagacggtctacacggcacaaacgtgcttctgcaacacagctatatcaaaca C:60
M R Y R R S T R H K R A S A T Q L Y Q T P:20
. . . . . . G:4381
tgcaaagcctctggcacctgcccccccgatgttattcctaaagtggaaggcacaactatt C:60
C K A S G T C P P D V I P K V E G T T I P:20
. . . . . . G:4441
gcagatcaacttttaaaatatggcagcctaggggtgttttttggaggtttgggtataggt C:60
A D Q L L K Y G S L G V F F G G L G I G P:20
. . . . . . G:4501
acaggtgcaggctctggtggtagggcaggctatgtgccattgtccactcgtcctcccact C:60
T G A G S G G R A G Y V P L S T R P P T P:20
. . . . . . G:4561
agtagtattaccacgtccaccattcgtccccctgtaactgtagaacccattggtccctta C:60
S S I T T S T I R P P V T V E P I G P L P:20
. . . . . . G:4621
gaaccatctatagtttctatgatagaagaaacaacatttattgagtctggcgcacctgct C:60
E P S I V S M I E E T T F I E S G A P A P:20
. . . . . . G:4681
ccatctattccatcagcaacagggtttgatgttacaacatctgcaaataatactcctgca C:60
P S I P S A T G F D V T T S A N N T P A P:20
. . . . . . G:4741
ataattaatgtaacatctataggtgaatcatctgtacaatcagtttctacacatttaaat C:60
I I N V T S I G E S S V Q S V S T H L N P:20
. . . . . . G:4801
cctacattcactgaaccatctataatacagcccccggcacctgcagaagcatctggtcat C:60
P T F T E P S I I Q P P A P A E A S G H P:20
. . . . . . G:4861
gtattgttttctagtccaactattagtacacacacctatgaagaaatccctatggataca C:60
V L F S S P T I S T H T Y E E I P M D T P:20
. . . . . . G:4921
tttgttacctctactgacagcagcagtgtaacaagtagtacacctattccagggtctcgc C:60
F V T S T D S S S V T S S T P I P G S R P:20
. . . . . . G:4981
cctacgacacgccttggtttatatagccgtgccacacaacaggttaaggtagtcgaccct C:60
P T T R L G L Y S R A T Q Q V K V V D P P:20
. . . . . . G:5041
gcttttatgtcatcaccacagaaattagtaacatataacaatcctgtttttgagggcgtt C:60
A F M S S P Q K L V T Y N N P V F E G V P:20
. . . . . . G:5101
gatacagatgaaactataatttttgatcgttcacaacttttacctgcaccggatcctgat C:60
D T D E T I I F D R S Q L L P A P D P D P:20
. . . . . . G:5161
tttttagacattatagctttgcataggcctgcattaacctctcgaagaggtactgttagg C:60
F L D I I A L H R P A L T S R R G T V R P:20
. . . . . . G:5221
tttagcaggcttggtaataaggccaccctacgtacacgtagtggaaaacaaattggggca C:60
F S R L G N K A T L R T R S G K Q I G A P:20
. . . . . . G:5281
cgggtacattattatcatgatattagtcctatccagcctgctgaagttcaggaagacata C:60
R V H Y Y H D I S P I Q P A E V Q E D I P:20
. . . . . . G:5341
gaattgcaacctttattaccacagtctgtgtccccttacactattaatgatggtttgtat C:60
E L Q P L L P Q S V S P Y T I N D G L Y P:20
. . . . . . G:5401
gatgtgtatgcagattctttgcagcaacccacgtttcacttaccttccacactttctacc C:60
D V Y A D S L Q Q P T F H L P S T L S T P:20
. . . . . . G:5461
cataataatactttcactgtacctattaatagtggtattgactttgtatatcaacccact C:60
H N N T F T V P I N S G I D F V Y Q P T P:20
. . . . . . G:5521
atgtccattgagtcaggtcctgacattccattaccttcgttacccacacatactcctttt C:60
M S I E S G P D I P L P S L P T H T P F P:20
. . . . . . G:5581
gttcctatagcccctacagctccatctacatctattattgttgatggtacagattttatt C:60
V P I A P T A P S T S I I V D G T D F I P:20
. . . . . . G:5641
ttacatcctagttattttttactacgtcgcaggcgtaaacgttttccatatttttttaca C:60
L H P S Y F L L R R R R K R F P Y F F T P:20
. . G:5662
gatgtccgtgtggcggcctag C:21
D V R V A A P:6
