HPV52 L1
Accession: H000127
NC: LC270063.1
Uniprot: Q05138
Protein: L1
Organism: Human papillomavirus type 52
Function
Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.
Mutation
5565-5600
5601-5700
5701-5800
5801-5900
5901-6000
6001-6100
6101-6200
6201-6300
6301-6400
6401-6500
6501-6600
6601-6700
6701-6800
6801-6900
6901-7000
7001-7100
7101-7154
Legend:same sensemissenseinsertiondeletion
show more details
Domain&Motif
| method | domain/motif name | position | length | description | graphical view |
|---|---|---|---|---|---|
| CDD | PHA02778 | 5643-7151 | 1509 | major capsid L1 protein; Provisional | ![]() ![]() |
| CDD | Late_protein_L1 | 5649-7151 | 1503 | L1 (late) protein; | ![]() ![]() |
| MOTIF_SCAN | 5817-5828 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 7044-7055 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 5802-5813 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6180-6191 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6678-6689 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6702-6713 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 5709-5720 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 5958-5969 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6297-6308 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6447-6458 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6651-6662 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6843-6854 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 6891-6902 | 12 | ![]() ![]() | ||
| MOTIF_SCAN | 5961-5978 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 5979-5996 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 6165-6182 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 6486-6503 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 6546-6563 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 6621-6638 | 18 | ![]() ![]() | ||
| MOTIF_SCAN | 5757-5765 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 5793-5801 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 5934-5942 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 6045-6053 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 6663-6671 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 6714-6722 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 6903-6911 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 7125-7133 | 9 | ![]() ![]() | ||
| MOTIF_SCAN | 5655-5678 | 24 | ![]() ![]() | ||
| MOTIF_SCAN | 7095-7142 | 48 | ![]() ![]() | ||
| MOTIF_SCAN | 7050-7103 | 54 | ![]() ![]() | ||
| MOTIF_SCAN | 7095-7148 | 54 | ![]() ![]() | ||
| MOTIF_SCAN | 5643-7151 | 1509 | ![]() ![]() | ||
| MOTIF_SCAN | 5667-5693 | 27 | ![]() ![]() | ||
| MOTIF_SCAN | 5643-7151 | 1509 | ![]() ![]() | ||
| MOTIF_SCAN | 5667-5693 | 27 | ![]() ![]() | ||
| INTERPROSCAN | 5652-7142 | 1491 | ![]() ![]() | ||
| INTERPROSCAN | 5700-7076 | 1377 | ![]() ![]() | ||
| INTERPROSCAN | 5691-5753 | 63 | ![]() ![]() | ||
| INTERPROSCAN | 5835-5903 | 69 | ![]() ![]() | ||
| INTERPROSCAN | 5940-6017 | 78 | ![]() ![]() | ||
| INTERPROSCAN | 6105-6158 | 54 | ![]() ![]() | ||
| INTERPROSCAN | 6198-6269 | 72 | ![]() ![]() | ||
| INTERPROSCAN | 6300-6362 | 63 | ![]() ![]() | ||
| INTERPROSCAN | 6375-6446 | 72 | ![]() ![]() | ||
| INTERPROSCAN | 6534-6602 | 69 | ![]() ![]() | ||
| INTERPROSCAN | 6606-6671 | 66 | ![]() ![]() | ||
| INTERPROSCAN | 6741-6794 | 54 | ![]() ![]() | ||
| INTERPROSCAN | 6990-7061 | 72 | ![]() ![]() | ||
| INTERPROSCAN | 5694-7073 | 1380 | ![]() ![]() | ||
| MOTIF_SEAR_IN_PROT | 5643-7151 | 1509 | ![]() ![]() | ||
| MOTIF_SEAR_IN_PROT | 5649-7151 | 1503 | ![]() ![]() | ||
| MOTIF_SEAR_IN_PROT | 5652-7142 | 1491 | ![]() ![]() | ||
| PROSITE_SCAN | 5655-5678 | 24 | ![]() ![]() | ||
| PROSITE_SCAN | 5709-5720 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 5757-5765 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 5793-5801 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 5802-5813 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 5817-5828 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 5934-5942 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 5958-5969 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 5961-5978 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 5979-5996 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 6045-6053 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 6165-6182 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 6180-6191 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6297-6308 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6447-6458 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6486-6503 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 6546-6563 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 6621-6638 | 18 | ![]() ![]() | ||
| PROSITE_SCAN | 6651-6662 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6663-6671 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 6678-6689 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6702-6713 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6714-6722 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 6843-6854 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6891-6902 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 6903-6911 | 9 | ![]() ![]() | ||
| PROSITE_SCAN | 7044-7055 | 12 | ![]() ![]() | ||
| PROSITE_SCAN | 7095-7142 | 48 | ![]() ![]() | ||
| PROSITE_SCAN | 7125-7133 | 9 | ![]() ![]() | ||
| SBASE | 5643-7148 | 1506 | ![]() ![]() | ||
| RADAR | 6243-6377 | 135 | ![]() ![]() | ||
| RADAR | 6468-6590 | 123 | ![]() ![]() | ||
| RADAR | 5883-5918 | 36 | ![]() ![]() | ||
| RADAR | 6012-6047 | 36 | ![]() ![]() | ||
| RADAR | 6174-6218 | 45 | ![]() ![]() | ||
| RADAR | 6936-6980 | 45 | ![]() ![]() | ||
| TMPRED_SERVER | 5565-5615 | 51 | ![]() ![]() | ||
| TMPRED_SERVER | 5583-5642 | 60 | ![]() ![]() | ||
| TMPRED_SERVER | 5736-5795 | 60 | ![]() ![]() | ||
| TMPRED_SERVER | 6501-6560 | 60 | ![]() ![]() | ||
| TMPRED_SERVER | 6771-6821 | 51 | ![]() ![]() | ||
| UNIPROTKB | 5565-5600 | 36 | ![]() ![]() |
Sequence
. . . . . . G:5624
atggtacagattttattttacatcctagttattttttactacgtcgcaggcgtaaacgtt C:60
M V Q I L F Y I L V I F Y Y V A G V N V P:20
. . . . . . G:5684
ttccatatttttttacagatgtccgtgtggcggcctagtgaggccactgtgtacctgcct C:60
F H I F L Q M S V W R P S E A T V Y L P P:20
. . . . . . G:5744
cctgtacctgtctctaaggttgtaagcactgatgagtatgtgtctcgcacaagcatctat C:60
P V P V S K V V S T D E Y V S R T S I Y P:20
. . . . . . G:5804
tattatgcaggcagttctcgattactaacagtaggacatccctatttttctattaaaaac C:60
Y Y A G S S R L L T V G H P Y F S I K N P:20
. . . . . . G:5864
accagtagtggtaatggtaaaaaagttttagttcccaaggtgtctggcctgcaatacagg C:60
T S S G N G K K V L V P K V S G L Q Y R P:20
. . . . . . G:5924
gtatttagaattaaattgccggaccctaataaatttggttttccagatacatctttttat C:60
V F R I K L P D P N K F G F P D T S F Y P:20
. . . . . . G:5984
aacccagaaacccaaaggttggtgtgggcctgtacaggcttggaaattggtaggggacag C:60
N P E T Q R L V W A C T G L E I G R G Q P:20
. . . . . . G:6044
cctttaggtgtgggtattagtgggcatcctttattaaacaagtttgatgatactgaaacc C:60
P L G V G I S G H P L L N K F D D T E T P:20
. . . . . . G:6104
agtaacaaatatgctggtaaacctggtatagataatagggaatgtttatctatggattat C:60
S N K Y A G K P G I D N R E C L S M D Y P:20
. . . . . . G:6164
aagcagactcagttatgcattttaggatgcaaacctcctataggtgaacattggggtaag C:60
K Q T Q L C I L G C K P P I G E H W G K P:20
. . . . . . G:6224
ggaaccccttgtaataataattcaggaaatcctggggattgtcctcccctacagctcatt C:60
G T P C N N N S G N P G D C P P L Q L I P:20
. . . . . . G:6284
aacagtgtaatacaggatggggacatggtagatacaggatttggttgcatggattttaat C:60
N S V I Q D G D M V D T G F G C M D F N P:20
. . . . . . G:6344
accttgcaagctagtaaaagtgatgtgcccattgatatatgtagcagtgtatgtaagtat C:60
T L Q A S K S D V P I D I C S S V C K Y P:20
. . . . . . G:6404
ccagattatttgcaaatggctagcgagccatatggtgacagtttgttcttttttcttaga C:60
P D Y L Q M A S E P Y G D S L F F F L R P:20
. . . . . . G:6464
cgtgagcaaatgtttgttagacacttttttaatagggccggtaccttaggtgaccctgtg C:60
R E Q M F V R H F F N R A G T L G D P V P:20
. . . . . . G:6524
ccaggtgatttatatatacaagggtctaactctggcaatactgccactgtacaaagcagt C:60
P G D L Y I Q G S N S G N T A T V Q S S P:20
. . . . . . G:6584
gctttttttcctactcctagtggttctatggtaacctcagaatcccaattatttaataaa C:60
A F F P T P S G S M V T S E S Q L F N K P:20
. . . . . . G:6644
ccgtactggttacaacgtgcgcagggccacaataatggcatatgttggggcaatcagttg C:60
P Y W L Q R A Q G H N N G I C W G N Q L P:20
. . . . . . G:6704
tttgtcacagttgtggataccactcgtagcactaacatgactttatgtgctgaggttaaa C:60
F V T V V D T T R S T N M T L C A E V K P:20
. . . . . . G:6764
aaggaaagcacatataaaaatgaaaattttaaggaataccttcgtcatggcgaggaattt C:60
K E S T Y K N E N F K E Y L R H G E E F P:20
. . . . . . G:6824
gatttacaatttatttttcaattgtgcaaaattacattaacagctgatgttatgacatac C:60
D L Q F I F Q L C K I T L T A D V M T Y P:20
. . . . . . G:6884
attcataagatggatgccactattttagaggactggcaatttggccttaccccaccaccg C:60
I H K M D A T I L E D W Q F G L T P P P P:20
. . . . . . G:6944
tctgcatctttggaggacacatacagatttgtcacttctactgctataacttgtcaaaaa C:60
S A S L E D T Y R F V T S T A I T C Q K P:20
. . . . . . G:7004
aacacaccacctaaaggaaaggaagatcctttaaaggactatatgttttgggaggtggat C:60
N T P P K G K E D P L K D Y M F W E V D P:20
. . . . . . G:7064
ttaaaagaaaagttttctgcagatttagatcagtttcctttaggtaggaagtttttgtta C:60
L K E K F S A D L D Q F P L G R K F L L P:20
. . . . . . G:7124
caggcagggctacaggctaggcccaaactaaaacgccctgcatcatcggccccacgtacc C:60
Q A G L Q A R P K L K R P A S S A P R T P:20
. . . G:7154
tccacaaagaagaaaaaggttaaaaggtaa C:30
S T K K K K V K R P:9
Legend:gene mutationamino acid mutation

