HPV52 L1

Accession: H000127
NC: LC270063.1
Uniprot: Q05138
Protein: L1
Organism: Human papillomavirus type 52

Function

Major capsid protein. It can form virus-like particles. It forms the pentameric assembly unit of the viral shell.

Mutation

5565-5600
5601-5700
5701-5800
5801-5900
5901-6000
6001-6100
6101-6200
6201-6300
6301-6400
6401-6500
6501-6600
6601-6700
6701-6800
6801-6900
6901-7000
7001-7100
7101-7154
Legend:same sensemissenseinsertiondeletion
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Domain&Motif

method domain/motif name position length description graphical view
CDDPHA027785643-71511509major capsid L1 protein; Provisional
CDDLate_protein_L15649-71511503L1 (late) protein;
MOTIF_SCAN5817-582812
MOTIF_SCAN7044-705512
MOTIF_SCAN5802-581312
MOTIF_SCAN6180-619112
MOTIF_SCAN6678-668912
MOTIF_SCAN6702-671312
MOTIF_SCAN5709-572012
MOTIF_SCAN5958-596912
MOTIF_SCAN6297-630812
MOTIF_SCAN6447-645812
MOTIF_SCAN6651-666212
MOTIF_SCAN6843-685412
MOTIF_SCAN6891-690212
MOTIF_SCAN5961-597818
MOTIF_SCAN5979-599618
MOTIF_SCAN6165-618218
MOTIF_SCAN6486-650318
MOTIF_SCAN6546-656318
MOTIF_SCAN6621-663818
MOTIF_SCAN5757-57659
MOTIF_SCAN5793-58019
MOTIF_SCAN5934-59429
MOTIF_SCAN6045-60539
MOTIF_SCAN6663-66719
MOTIF_SCAN6714-67229
MOTIF_SCAN6903-69119
MOTIF_SCAN7125-71339
MOTIF_SCAN5655-567824
MOTIF_SCAN7095-714248
MOTIF_SCAN7050-710354
MOTIF_SCAN7095-714854
MOTIF_SCAN5643-71511509
MOTIF_SCAN5667-569327
MOTIF_SCAN5643-71511509
MOTIF_SCAN5667-569327
INTERPROSCAN5652-71421491
INTERPROSCAN5700-70761377
INTERPROSCAN5691-575363
INTERPROSCAN5835-590369
INTERPROSCAN5940-601778
INTERPROSCAN6105-615854
INTERPROSCAN6198-626972
INTERPROSCAN6300-636263
INTERPROSCAN6375-644672
INTERPROSCAN6534-660269
INTERPROSCAN6606-667166
INTERPROSCAN6741-679454
INTERPROSCAN6990-706172
INTERPROSCAN5694-70731380
MOTIF_SEAR_IN_PROT5643-71511509
MOTIF_SEAR_IN_PROT5649-71511503
MOTIF_SEAR_IN_PROT5652-71421491
PROSITE_SCAN5655-567824
PROSITE_SCAN5709-572012
PROSITE_SCAN5757-57659
PROSITE_SCAN5793-58019
PROSITE_SCAN5802-581312
PROSITE_SCAN5817-582812
PROSITE_SCAN5934-59429
PROSITE_SCAN5958-596912
PROSITE_SCAN5961-597818
PROSITE_SCAN5979-599618
PROSITE_SCAN6045-60539
PROSITE_SCAN6165-618218
PROSITE_SCAN6180-619112
PROSITE_SCAN6297-630812
PROSITE_SCAN6447-645812
PROSITE_SCAN6486-650318
PROSITE_SCAN6546-656318
PROSITE_SCAN6621-663818
PROSITE_SCAN6651-666212
PROSITE_SCAN6663-66719
PROSITE_SCAN6678-668912
PROSITE_SCAN6702-671312
PROSITE_SCAN6714-67229
PROSITE_SCAN6843-685412
PROSITE_SCAN6891-690212
PROSITE_SCAN6903-69119
PROSITE_SCAN7044-705512
PROSITE_SCAN7095-714248
PROSITE_SCAN7125-71339
SBASE5643-71481506
RADAR6243-6377135
RADAR6468-6590123
RADAR5883-591836
RADAR6012-604736
RADAR6174-621845
RADAR6936-698045
TMPRED_SERVER5565-561551
TMPRED_SERVER5583-564260
TMPRED_SERVER5736-579560
TMPRED_SERVER6501-656060
TMPRED_SERVER6771-682151
UNIPROTKB5565-560036

Sequence

         .         .         .         .         .         .     G:5624
atggtacagattttattttacatcctagttattttttactacgtcgcaggcgtaaacgtt     C:60
M V Q I L F Y I L V I F Y Y V A G V N V      P:20


. . . . . .     G:5684
ttccatatttttttacagatgtccgtgtggcggcctagtgaggccactgtgtacctgcct     C:60
F H I F L Q M S V W R P S E A T V Y L P      P:20


. . . . . .     G:5744
cctgtacctgtctctaaggttgtaagcactgatgagtatgtgtctcgcacaagcatctat     C:60
P V P V S K V V S T D E Y V S R T S I Y      P:20


. . . . . .     G:5804
tattatgcaggcagttctcgattactaacagtaggacatccctatttttctattaaaaac     C:60
Y Y A G S S R L L T V G H P Y F S I K N      P:20


. . . . . .     G:5864
accagtagtggtaatggtaaaaaagttttagttcccaaggtgtctggcctgcaatacagg     C:60
T S S G N G K K V L V P K V S G L Q Y R      P:20


. . . . . .     G:5924
gtatttagaattaaattgccggaccctaataaatttggttttccagatacatctttttat     C:60
V F R I K L P D P N K F G F P D T S F Y      P:20


. . . . . .     G:5984
aacccagaaacccaaaggttggtgtgggcctgtacaggcttggaaattggtaggggacag     C:60
N P E T Q R L V W A C T G L E I G R G Q      P:20


. . . . . .     G:6044
cctttaggtgtgggtattagtgggcatcctttattaaacaagtttgatgatactgaaacc     C:60
P L G V G I S G H P L L N K F D D T E T      P:20


. . . . . .     G:6104
agtaacaaatatgctggtaaacctggtatagataatagggaatgtttatctatggattat     C:60
S N K Y A G K P G I D N R E C L S M D Y      P:20


. . . . . .     G:6164
aagcagactcagttatgcattttaggatgcaaacctcctataggtgaacattggggtaag     C:60
K Q T Q L C I L G C K P P I G E H W G K      P:20


. . . . . .     G:6224
ggaaccccttgtaataataattcaggaaatcctggggattgtcctcccctacagctcatt     C:60
G T P C N N N S G N P G D C P P L Q L I      P:20


. . . . . .     G:6284
aacagtgtaatacaggatggggacatggtagatacaggatttggttgcatggattttaat     C:60
N S V I Q D G D M V D T G F G C M D F N      P:20


. . . . . .     G:6344
accttgcaagctagtaaaagtgatgtgcccattgatatatgtagcagtgtatgtaagtat     C:60
T L Q A S K S D V P I D I C S S V C K Y      P:20


. . . . . .     G:6404
ccagattatttgcaaatggctagcgagccatatggtgacagtttgttcttttttcttaga     C:60
P D Y L Q M A S E P Y G D S L F F F L R      P:20


. . . . . .     G:6464
cgtgagcaaatgtttgttagacacttttttaatagggccggtaccttaggtgaccctgtg     C:60
R E Q M F V R H F F N R A G T L G D P V      P:20


. . . . . .     G:6524
ccaggtgatttatatatacaagggtctaactctggcaatactgccactgtacaaagcagt     C:60
P G D L Y I Q G S N S G N T A T V Q S S      P:20


. . . . . .     G:6584
gctttttttcctactcctagtggttctatggtaacctcagaatcccaattatttaataaa     C:60
A F F P T P S G S M V T S E S Q L F N K      P:20


. . . . . .     G:6644
ccgtactggttacaacgtgcgcagggccacaataatggcatatgttggggcaatcagttg     C:60
P Y W L Q R A Q G H N N G I C W G N Q L      P:20


. . . . . .     G:6704
tttgtcacagttgtggataccactcgtagcactaacatgactttatgtgctgaggttaaa     C:60
F V T V V D T T R S T N M T L C A E V K      P:20


. . . . . .     G:6764
aaggaaagcacatataaaaatgaaaattttaaggaataccttcgtcatggcgaggaattt     C:60
K E S T Y K N E N F K E Y L R H G E E F      P:20


. . . . . .     G:6824
gatttacaatttatttttcaattgtgcaaaattacattaacagctgatgttatgacatac     C:60
D L Q F I F Q L C K I T L T A D V M T Y      P:20


. . . . . .     G:6884
attcataagatggatgccactattttagaggactggcaatttggccttaccccaccaccg     C:60
I H K M D A T I L E D W Q F G L T P P P      P:20


. . . . . .     G:6944
tctgcatctttggaggacacatacagatttgtcacttctactgctataacttgtcaaaaa     C:60
S A S L E D T Y R F V T S T A I T C Q K      P:20


. . . . . .     G:7004
aacacaccacctaaaggaaaggaagatcctttaaaggactatatgttttgggaggtggat     C:60
N T P P K G K E D P L K D Y M F W E V D      P:20


. . . . . .     G:7064
ttaaaagaaaagttttctgcagatttagatcagtttcctttaggtaggaagtttttgtta     C:60
L K E K F S A D L D Q F P L G R K F L L      P:20


. . . . . .     G:7124
caggcagggctacaggctaggcccaaactaaaacgccctgcatcatcggccccacgtacc     C:60
Q A G L Q A R P K L K R P A S S A P R T      P:20


. . .      G:7154
tccacaaagaagaaaaaggttaaaaggtaa      C:30
S T K K K K V K R      P:9


Legend:gene mutationamino acid mutation